Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase

uperfamily

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: 7-bladed beta-propeller [50964]
   consists of seven 4-stranded beta-sheet motifs; meander
4. Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase [50969]
   uperfamily

Families:

1. YVTN repeat [82166] (1)
   more regular propeller with clear sequence repeats
   1. Surface layer protein [82167]
      1. Archaeon Methanosarcina mazei [TaxId: 2209] [82168] (1)
         1. 1l0q
            complexed with mse, ycm
            1. region a:1-301 [77645]
            2. region b:1-301 [77647]
            3. region c:1-301 [77649]
            4. region d:1-301 [77651]
2. Quinohemoprotein amine dehydrogenase B chain [69309] (2)
   less regular propeller with imperfect sequence repeats; quinone cofactor is a tryptophan derivative in another subunit
   1. Quinohemoprotein amine dehydrogenase B chain [69310]
      1. Paracoccus denitrificans [TaxId: 266] [69311] (2)
         1. 1pby
            complexed with hem, tbu, trw
            1. chain b [94422]
         2. 1jju
            complexed with hem, na, tbu, trq
            1. chain b [66779]
      2. Pseudomonas putida [TaxId: 303] [69312] (2)
         1. 1jmx
            complexed with hec, ni, trq
            1. chain b [66906]
         2. 1jmz
            complexed with hec, ni, pnd, trq
            1. chain b [66913]
3. Methylamine dehydrogenase, H-chain [50970] (2)
   less regular propeller without notable sequence repeats; quinone cofactor is a tryptophan derivative in another subunit
   1. Methylamine dehydrogenase, H-chain [50971]
      1. Paracoccus denitrificans [TaxId: 266] [50972] (21)
         1. 2bbk
            complexed with owq
            1. chain h [27634]
            2. chain j [27635]
         2. 2gc7
            automatically matched to d2bbkh_
            complexed with hem, na, trq
            1. region a:32-386 [134954]
         3. 2gc7
            automatically matched to d2bbkh_
            complexed with hem, na, trq
            1. region e:32-386 [134958]
         4. 2gc7
            automatically matched to d2bbkh_
            complexed with hem, na, trq
            1. region i:32-386 [134962]
         5. 2gc7
            automatically matched to d2bbkh_
            complexed with hem, na, trq
            1. region m:32-386 [134966]
         6. 2gc4
            automatically matched to d2bbkh_
            complexed with cu, hem, na, trq
            1. region a:32-386 [134934]
         7. 2gc4
            automatically matched to d2bbkh_
            complexed with cu, hem, na, trq
            1. region e:32-386 [134938]
         8. 2gc4
            automatically matched to d2bbkh_
            complexed with cu, hem, na, trq
            1. region i:32-386 [134942]
         9. 2gc4
            automatically matched to d2bbkh_
            complexed with cu, hem, na, trq
            1. region m:32-386 [134946]
         10. 2j56
             automatically matched to d2bbkh_
             complexed with cu, gol, na, tqq
             1. region h:32-386 [138019]
         11. 2j56
             automatically matched to d2bbkh_
             complexed with cu, gol, na, tqq
             1. region j:32-386 [138020]
         12. 1mg2
             complexed with cu, hem, na, po4, trq; mutant
             1. chain a [79059]
             2. chain e [79063]
             3. chain i [79067]
             4. chain m [79071]
         13. 2j57
             automatically matched to d2bbkh_
             complexed with cu, tqq
             1. region g:32-386 [138025]
         14. 2j57
             automatically matched to d2bbkh_
             complexed with cu, tqq
             1. region h:32-386 [138026]
         15. 2j57
             automatically matched to d2bbkh_
             complexed with cu, tqq
             1. region i:32-386 [138027]
         16. 2j57
             automatically matched to d2bbkh_
             complexed with cu, tqq
             1. region j:32-386 [138028]
         17. 2j55
             automatically matched to d2bbkh_
             complexed with cu, gol, trq
             1. region h:32-386 [138015]
         18. 2j55
             automatically matched to d2bbkh_
             complexed with cu, gol, trq
             1. region j:32-386 [138016]
         19. 1mg3
             complexed with cu, hem, na, po4, trw; mutant
             1. chain a [79075]
             2. chain e [79079]
             3. chain i [79083]
             4. chain m [79087]
         20. 2mta
             complexed with cu, hem, owq, po4
             1. chain h [27636]
         21. 1mda
             complexed with cu, owq
             1. chain h [27637]
             2. chain j [27638]
      2. Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007] [50973] (3)
         1. 2mad
            complexed with qtr
            1. chain h [27639]
         2. 1maf
            complexed with qtr, tfh
            1. chain h [27640]
         3. 1mae
            complexed with hdz, qtr
            1. chain h [27641]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk