Structural Classification of Proteins
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Family: Synaptotagmin-like (S variant)

topologically similar to the C-terminal domain of PapD

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: C2 domain-like [49561]
    sandwich; 8 strands in 2 sheets; greek-key
  4. Superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) [49562]
    two constituent families are related by circular permutation
    link to SUPERFAMILY database - Superfamily
  5. Family: Synaptotagmin-like (S variant) [49575]
    topologically similar to the C-terminal domain of PapD

Protein Domains:

  1. Synaptogamin I [49576]
    duplication: contains tandem repeat of two similar domains
    1. Rat (Rattus norvegicus) [TaxId: 10116] [49577] (7)
      SQ P21707 271-419 ! SQ P21707 271-419
      1. 1uow picpic
        complexed with act, ca, gol
        1. chain a [107975] picpiclink
      2. 1tjx picpic
        complexed with act, ca, gol
        1. chain a [112465] picpiclink
      3. 1tjm picpic
        complexed with gol, sr
        1. chain a [107047] picpiclink
      4. 1uov picpic
        complexed with ca, gol
        1. chain a [107974] picpiclink
      5. 1rsy picpic
        first C2 domain
        CASP1
        complexed with so4
        1. chain a [23192] picpiclink
      6. 1byn picpic
        first C2 domain
        complexed with kal
        1. chain a [23193] picpiclink
      7. 1k5w picpic
        second C2 domain
        complexed with ca
        1. chain a [68212] picpiclink
    2. Homo sapiens [TaxId: 9606] [158946] (2)
      1. 2r83 picpic
        automatically matched to d1byna_
        complexed with cl
        1. region a:271-393 [151670] picpiclink
      2. 2r83 picpic
        automatically matched to d1byna_
        complexed with cl
        1. region b:271-393 [151671] picpiclink
  2. Synaptotagmin III [109606]
    duplication: contains 2 C2 domains
    1. Rat (Rattus norvegicus) [TaxId: 10116] [109607] (1)
      SQ P40748 293-588
      1. 1dqv picpic
        1. region a:295-424 [23194] picpiclink
        2. region a:425-569 [23195] picpiclink
  3. Synaptotagmin IV [101562]
    duplication: contains 2 C2 domains
    1. Human (Homo sapiens) [TaxId: 9606] [101563] (1)
      1. 1ugk picpic
        1. chain a [99365] picpiclink
    2. Rat (Rattus norvegicus) [TaxId: 10116] [110115] (2)
      SQ P50232 288-425
      1. 1w15 picpic
        second C2 domain
        complexed with ca, cl, na
        1. chain a [109041] picpiclink
      2. 1w16 picpic
        second C2 domain
        complexed with cl, na
        1. chain a [109042] picpiclink
  4. Regulating synaptic membrane exocytosis protein, rim2 [101564]
    1. Human (Homo sapiens) [TaxId: 9606] [101565] (2)
      1. 2bwq picpic
        automatically matched to d1v27a_
        complexed with so4
        1. region a:729-853 [129380] picpiclink
      2. 1v27 picpic
        first C2 domain
        1. chain a [100262] picpiclink
  5. Piccolo [101566]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [101567] (1)
      1. 1rh8 picpic
        first C2 domain
        1. chain a [97467] picpiclink
  6. C2 domain from protein kinase c (alpha) [49578]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [49579] (1)
      1. 1dsy picpic
        1. chain a [23196] picpiclink
  7. C2 domain from protein kinase c (beta) [49580]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [49581] (1)
      1. 1a25 picpic
        complexed with ca, pse
        1. chain a [23197] picpiclink
        2. chain b [23198] picpiclink
  8. C2b-domain of rabphilin [49582]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [49583] (4)
      1. 2cm5 picpic
        automatically matched to d3rpba_
        complexed with ca
        1. region a:541-677 [130613] picpiclink
      2. 2cm6 picpic
        automatically matched to d3rpba_
        complexed with ca, po4
        1. region a:541-677 [130614] picpiclink
      3. 2cm6 picpic
        automatically matched to d3rpba_
        complexed with ca, po4
        1. region b:1541-1677 [130615] picpiclink
      4. 3rpb picpic
        1. chain a [23199] picpiclink
  9. C2 domain protein At1g63220 [117082]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117083] (1)
      SQ Q9C8S6 2-125
      1. 1wfj picpic
        Structural genomics target
        1. chain a [114584] picpiclink
  10. Synaptotagmin XIII [117084]
    1. Human (Homo sapiens) [TaxId: 9606] [117085] (1)
      SQ Q7L8C5 155-280
      1. 1wfm picpic
        Structural genomics target; 1st C2 domain (of 2)
        1. chain a [114587] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk