Superfamily: Clavaminate synthase-like

Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
uperfamily

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: Double-stranded beta-helix [51181]
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology
4. Superfamily: Clavaminate synthase-like [51197]
   Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
   uperfamily

Families:

1. Penicillin synthase-like [51198] (4)
   common fold is rather distorted
   1. Isopenicillin N synthase [51199]
      1. Emericella nidulans [TaxId: 162425] [51200] (29)
         SQ P05326
   2. Deacetoxycephalosporin C synthase [51201]
      1. Streptomyces clavuligerus [TaxId: 1901] [51202] (17)
         SQ P18548
   3. Anthocyanidin synthase [69346]
      1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [69347] (4)
   4. 1-aminocyclopropane-1-carboxylate oxidase 1 [141621]
      1. Petunia hybrida [TaxId: 4102] [141622] (2)
         SQ Q08506 2-308
2. Clavaminate synthase [51203] (1)
   1. Clavaminate synthase [51204]
      1. Streptomyces clavuligerus [TaxId: 1901] [51205] (5)
3. Gab protein (hypothetical protein YgaT) [63855] (1)
   1. Gab protein (hypothetical protein YgaT) [63856]
      unknown function
      1. Escherichia coli [TaxId: 562] [63857] (1)
4. YhcH-like [89413] (1)
   1. Hypothetical protein HI0227 [89414]
      1. Haemophilus influenzae [TaxId: 727] [89415] (5)
5. Type II Proline 3-hydroxylase (proline oxidase) [63858] (1)
   1. Type II Proline 3-hydroxylase (proline oxidase) [63859]
      1. Streptomyces sp. [TaxId: 1931] [63860] (2)
6. TauD/TfdA-like [75038] (2)
   1. Taurine/alpha-ketoglutarate dioxygenase TauD [75039]
      1. Escherichia coli [TaxId: 562] [75040] (4)
   2. Putative alkylsulfatase AtsK [101989]
      1. Pseudomonas putida [TaxId: 303] [101990] (6)
         SQ Q9WWU5
7. gamma-Butyrobetaine hydroxylase [89416] (2)
   Pfam 03322
   1. Carbapenem synthase, CarC [89417]
      1. Erwinia carotovora [TaxId: 554] [89418] (2)
   2. Clavaminate synthase-like protein At3g21360 [117321]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117322] (3)
         SQ Q9LIG0
8. Hypoxia-inducible factor HIF ihhibitor (FIH1) [82194] (1)
   1. Hypoxia-inducible factor HIF ihhibitor (FIH1) [82195]
      1. Human (Homo sapiens) [TaxId: 9606] [82196] (10)
9. PhyH-like [141623] (2)
   Pfam 05721
   1. Syringomycin biosynthesis enzyme 2, SyrB2 [141624]
      1. Pseudomonas syringae pv. syringae [TaxId: 321] [141625] (6)
         SQ Q9RBY6 3-310
   2. Phytanoyl-CoA dioxygenase, PhyH [141626]
      1. Human (Homo sapiens) [TaxId: 9606] [141627] (1)
         SQ O14832 43-338
10. AlkB-like [141628] (2)
    1. Alkylated DNA repair protein AlkB [141629]
       1. Escherichia coli [TaxId: 562] [141630] (7)
          SQ P05050 15-214
    2. AlkB homolog 3 [141631]
       Prostate cancer antigen 1, DEPC-1
       1. Human (Homo sapiens) [TaxId: 9606] [141632] (1)
          SQ Q96Q83 70-279
11. Asparaginyl hydroxylase-like [141633] (1)
    Pfam 08007
    1. Putative asparaginyl hydroxylase YxbC [141634]
       1. Bacillus subtilis [TaxId: 1423] [141635] (4)
          SQ P46327 8-326
12. YbiU-like [141636] (1)
    Pfam 07350; DUF1479
    1. Hypothetical protein YbiU [141637]
       1. Salmonella typhimurium [TaxId: 90371] [141638] (1)
          SQ Q8ZQM7 3-419
13. TehB-like [159307] (2)
    Pfam 09313; DUF1971
    1. Uncharacterized protein YeaR [159308]
       1. Escherichia coli [TaxId: 562] [159309] (4)
          SQ P64488 1-109
    2. Tellurite resistance protein B, TehB [159310]
       1. Vibrio fischeri [TaxId: 668] [159311] (8)
          SQ Q5E3X2 5-100

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk