Structural Classification of Proteins

Superfamily: AFP III-like domain

: duplication: consists of two structural repeats related by pseudo dyad
uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: beta-clip [51268]
double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
Superfamily: AFP III-like domain [51269]
duplication: consists of two structural repeats related by pseudo dyad
uperfamily

Families:

AFP III-like domain [51270] (5)
Pfam 01354
1. Type III antifreeze protein, AFP III [51271]
  1. Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199] [51272] (31)
    1. 1hg7
      complexed with so4
      1. chain a [28280]
    2. 1msi
      mutant
      1. chain a [28281]
    3. 3msi
      mutant
      1. chain a [28282]
    4. 1b7j
      mutant
      1. chain a [28283]
    5. 2jia
      mutant
      1. chain a [28286]
    6. 7ame
      mutant
      1. chain a [28287]
    7. 1jab
      mutant
      1. chain a [28284]
    8. 1ame
      mutant
      1. chain a [28285]
    9. 1b7i
      mutant
      1. chain a [28288]
    10. 1ekl
      mutant
      1. chain a [28289]
    11. 2spg
      mutant
      1. chain a [28291]
    12. 7msi
      mutant
      1. chain a [28290]
    13. 5msi
      mutant
      1. chain a [28293]
    14. 4msi
      mutant
      1. chain a [28292]
    15. 9ame
      mutant
      1. chain a [28294]
    16. 1gzi
      mutant
      1. chain a [28295]
    17. 6msi
      mutant
      1. chain a [28296]
    18. 6ame
      mutant
      1. chain a [28299]
    19. 4ame
      mutant
      1. chain a [28298]
    20. 2msi
      mutant
      1. chain a [28297]
    21. 2ame
      mutant
      1. chain a [28300]
    22. 8ame
      mutant
      1. chain a [28301]
    23. 1ops
      1. chain a [28302]
    24. 2msj
      mutant
      1. chain a [28303]
    25. 1msj
      mutant
      1. chain a [28305]
    26. 1b7k
      mutant
      1. chain a [28306]
    27. 3ame
      mutant
      1. chain a [28304]
    28. 9msi
      mutant
      1. chain a [28307]
    29. 8msi
      mutant
      1. chain a [28308]
    30. 1kdf
      mutant
      1. chain a [28309]
    31. 1kde
      mutant
      1. chain a [28310]
  2. Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201] [89424] (1)
    1. 1ucs
      1. chain a [88466]
  3. Antarctic eel pout (Austrolycichthys brachycephalus) and (Lycodichthys dearborni), RD3 isoform [TaxId: 36221] [51273] (4)
    duplication: intramolecular dimer
    1. 1c8a
      1. region a:1-68 [28312]
      2. region a:69-134 [28313]
    2. 1c89
      1. region a:1-68 [28314]
      2. region a:69-134 [28315]
    3. 3nla
      N-Terminal domain with a linker portion
      1. chain a [28316]
    4. 3rdn
      N-Terminal domain with a linker portion
      1. chain a [28311]
2. Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain [110328]
  1. Bacillus subtilis [TaxId: 1423] [110329] (1)
    SQ P39625
    1. 1vli
      Structural genomics target
      complexed with zn
      1. region a:297-368 [108830]
3. Capsule biosynthesis protein SiaC, C-terminal domain [117330]
  1. Neisseria meningitidis [TaxId: 487] [117331] (4)
    SQ Q57265
    1. 2zdr
      automatically matched to d1xuua1
      complexed with mg, mpd
      1. region a:282-349 [154398]
    2. 3cm4
      automatically matched to d1xuua1
      complexed with mlt
      1. region a:282-349 [156770]
    3. 1xuu
      complexed with mlt, mn
      1. region a:282-349 [116067]
    4. 1xuz
      complexed with mmn, mn, pep
      1. region a:282-349 [116072]