Structural Classification of Proteins
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Family: AFP III-like domain

Pfam 01354

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: beta-clip [51268]
    double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
  4. Superfamily: AFP III-like domain [51269]
    duplication: consists of two structural repeats related by pseudo dyad
    link to SUPERFAMILY database - Superfamily
  5. Family: AFP III-like domain [51270]
    Pfam 01354

Protein Domains:

  1. Type III antifreeze protein, AFP III [51271]
    1. Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199] [51272] (31)
      1. 1hg7 picpic
        complexed with so4
        1. chain a [28280] picpiclink
      2. 1msi picpic
        mutant
        1. chain a [28281] picpiclink
      3. 3msi picpic
        mutant
        1. chain a [28282] picpiclink
      4. 1b7j picpic
        mutant
        1. chain a [28283] picpiclink
      5. 2jia picpic
        mutant
        1. chain a [28286] picpiclink
      6. 7ame picpic
        mutant
        1. chain a [28287] picpiclink
      7. 1jab picpic
        mutant
        1. chain a [28284] picpiclink
      8. 1ame picpic
        mutant
        1. chain a [28285] picpiclink
      9. 1b7i picpic
        mutant
        1. chain a [28288] picpiclink
      10. 1ekl picpic
        mutant
        1. chain a [28289] picpiclink
      11. 2spg picpic
        mutant
        1. chain a [28291] picpiclink
      12. 7msi picpic
        mutant
        1. chain a [28290] picpiclink
      13. 5msi picpic
        mutant
        1. chain a [28293] picpiclink
      14. 4msi picpic
        mutant
        1. chain a [28292] picpiclink
      15. 9ame picpic
        mutant
        1. chain a [28294] picpiclink
      16. 1gzi picpic
        mutant
        1. chain a [28295] picpiclink
      17. 6msi picpic
        mutant
        1. chain a [28296] picpiclink
      18. 6ame picpic
        mutant
        1. chain a [28299] picpiclink
      19. 4ame picpic
        mutant
        1. chain a [28298] picpiclink
      20. 2msi picpic
        mutant
        1. chain a [28297] picpiclink
      21. 2ame picpic
        mutant
        1. chain a [28300] picpiclink
      22. 8ame picpic
        mutant
        1. chain a [28301] picpiclink
      23. 1ops picpic
        1. chain a [28302] picpiclink
      24. 2msj picpic
        mutant
        1. chain a [28303] picpiclink
      25. 1msj picpic
        mutant
        1. chain a [28305] picpiclink
      26. 1b7k picpic
        mutant
        1. chain a [28306] picpiclink
      27. 3ame picpic
        mutant
        1. chain a [28304] picpiclink
      28. 9msi picpic
        mutant
        1. chain a [28307] picpiclink
      29. 8msi picpic
        mutant
        1. chain a [28308] picpiclink
      30. 1kdf picpic
        mutant
        1. chain a [28309] picpiclink
      31. 1kde picpic
        mutant
        1. chain a [28310] picpiclink
    2. Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201] [89424] (1)
      1. 1ucs picpic
        1. chain a [88466] picpiclink
    3. Antarctic eel pout (Austrolycichthys brachycephalus) and (Lycodichthys dearborni), RD3 isoform [TaxId: 36221] [51273] (4)
      duplication: intramolecular dimer
      1. 1c8a picpic
        1. region a:1-68 [28312] picpiclink
        2. region a:69-134 [28313] picpiclink
      2. 1c89 picpic
        1. region a:1-68 [28314] picpiclink
        2. region a:69-134 [28315] picpiclink
      3. 3nla picpic
        N-Terminal domain with a linker portion
        1. chain a [28316] picpiclink
      4. 3rdn picpic
        N-Terminal domain with a linker portion
        1. chain a [28311] picpiclink
  2. Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain [110328]
    1. Bacillus subtilis [TaxId: 1423] [110329] (1)
      SQ P39625
      1. 1vli picpicxref
        Structural genomics target
        complexed with zn
        1. region a:297-368 [108830] picpiclink
  3. Capsule biosynthesis protein SiaC, C-terminal domain [117330]
    1. Neisseria meningitidis [TaxId: 487] [117331] (4)
      SQ Q57265
      1. 2zdr picpicxref
        automatically matched to d1xuua1
        complexed with mg, mpd
        1. region a:282-349 [154398] picpiclink
      2. 3cm4 picpicxref
        automatically matched to d1xuua1
        complexed with mlt
        1. region a:282-349 [156770] picpiclink
      3. 1xuu picpicxref
        complexed with mlt, mn
        1. region a:282-349 [116067] picpiclink
      4. 1xuz picpicxref
        complexed with mmn, mn, pep
        1. region a:282-349 [116072] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk