Superfamily: SET domain

duplication: the core is composed of two structural repeats similar to (circularly permuted) repeats of AFPIII
also contains a substrate-binding alpha+beta subdomain inserted in the core
uperfamily

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: beta-clip [51268]
   double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
4. Superfamily: SET domain [82199]
   duplication: the core is composed of two structural repeats similar to (circularly permuted) repeats of AFPIII
   also contains a substrate-binding alpha+beta subdomain inserted in the core
   uperfamily

Families:

1. Histone lysine methyltransferases [82200] (3)
   contains metal-binding preSET and postSET domains
   1. Dim-5 [82201]
      1. Fungus (Neurospora crassa) [TaxId: 5141] [82202] (2)
         1. 1ml9
            complexed with zn
            1. chain a [79282]
         2. 1peg
            complexed with histone H3 peptide
            complexed with sah, zn
            1. chain a [94598]
            2. chain b [94599]
   2. SET domain of Clr4 [82203]
      ortholog of Dim-5
      1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [82204] (2)
         1. 1mvh
            complexed with ni, so4, zn
            1. chain a [79500]
         2. 1mvx
            complexed with ni, so4, zn
            1. chain a [79546]
   3. Histone H3 K4-specific methyltransferase SET7/9 catalytic domain [82205]
      1. Human (Homo sapiens) [TaxId: 9606] [82206] (11)
         SQ Q8WTS6 52-336
         1. 2f69
            automatically matched to d1o9sa2
            complexed with ace, mlz, sah
            1. region a:194-364 [133036]
         2. 3cbp
            automatically matched to d1o9sa2
            complexed with bme, gol, sfg
            1. region a:194-363 [156166]
         3. 3cbo
            automatically matched to d1o9sa2
            complexed with bme, gol, mlz, sah
            1. region a:194-364 [156164]
         4. 3cbm
            automatically matched to d1o9sa2
            complexed with bme, mlz, sah
            1. region a:194-364 [156162]
         5. 1h3i
            complexed with mg
            1. region a:194-344 [76636]
            2. region b:194-344 [76638]
         6. 1mt6
            complexed with sah
            1. region a:194-337 [79447]
         7. 1n6a
            complexed with mse, sam
            1. region a:194-361 [80122]
         8. 1xqh
            complexed with mlz, sah
            1. region a:194-366 [115847]
            2. region e:194-366 [115849]
         9. 1o9s
            complexed with mlz, sah
            1. region a:194-366 [81250]
            2. region b:194-366 [81252]
         10. 1n6c
             complexed with sam
             1. region a:194-363 [80124]
         11. 1muf
             complexed with mse
             1. region a:194-337 [79484]
2. Viral histone H3 Lysine 27 Methyltransferase [82207] (1)
   consists of SET domain only; dimeric
   1. Viral histone H3 Lysine 27 Methyltransferase [82208]
      1. Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506] [82209] (3)
         1. 2g46
            automatically matched to d1n3ja_
            complexed with mlz, sah
            1. region a:1-119 [134580]
         2. 2g46
            automatically matched to d1n3ja_
            complexed with mlz, sah
            1. region b:1-119 [134581]
         3. 1n3j
            1. chain a [79963]
            2. chain b [79964]
3. RuBisCo LSMT catalytic domain [82210] (1)
   1. RuBisCo LSMT catalytic domain [82211]
      1. Garden pea (Pisum sativum) [TaxId: 3888] [82212] (15)
         1. 2h2j
            automatically matched to d1ozvb2
            complexed with mlz, sfg
            1. region a:50-310 [136009]
         2. 2h2j
            automatically matched to d1ozvb2
            complexed with mlz, sfg
            1. region b:50-310 [136011]
         3. 2h2j
            automatically matched to d1ozvb2
            complexed with mlz, sfg
            1. region c:50-310 [136013]
         4. 1p0y
            complexed with mlz, sah
            1. region a:49-310 [87655]
            2. region b:48-310 [87657]
            3. region c:49-310 [87659]
         5. 1mlv
            complexed with epe, sah
            1. region a:50-310 [79284]
            2. region b:49-310 [79286]
            3. region c:50-310 [79288]
         6. 1ozv
            complexed with lys, sah
            1. region a:50-310 [87633]
            2. region b:48-310 [87635]
            3. region c:49-310 [87637]
         7. 2h23
            automatically matched to d1ozvb2
            complexed with m3l, sah
            1. region a:50-310 [135983]
         8. 2h23
            automatically matched to d1ozvb2
            complexed with m3l, sah
            1. region b:50-310 [135985]
         9. 2h23
            automatically matched to d1ozvb2
            complexed with m3l, sah
            1. region c:50-310 [135987]
         10. 2h21
             automatically matched to d1ozvb2
             complexed with sam
             1. region a:50-310 [135977]
         11. 2h21
             automatically matched to d1ozvb2
             complexed with sam
             1. region b:50-310 [135979]
         12. 2h21
             automatically matched to d1ozvb2
             complexed with sam
             1. region c:50-310 [135981]
         13. 2h2e
             automatically matched to d1ozvb2
             complexed with lys, sa8
             1. region a:50-310 [135999]
         14. 2h2e
             automatically matched to d1ozvb2
             complexed with lys, sa8
             1. region b:50-310 [136001]
         15. 2h2e
             automatically matched to d1ozvb2
             complexed with lys, sa8
             1. region c:50-310 [136003]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk