Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: PUA domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: PUA domain-like [88696]
    pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other
  4. Superfamily: PUA domain-like [88697]
    link to SUPERFAMILY database - Superfamily

Families:

  1. PUA domain [88698] (10)
    RNA-binding domain
    1. Pseudouridine synthase II TruB, C-terminal domain [88699]
      1. Escherichia coli [TaxId: 562] [88700] (3)
        1. 1k8w picpicxref
          complexed with fhu, so4; mutant
          1. region a:251-312 [83094] picpiclink
        2. 1r3f picpicxref
          1. region a:251-314 [96909] picpiclink
        3. 1zl3 picpicxref
          automatically matched to d1r3fa1
          complexed with so4, ud5; mutant
          1. region a:251-310 [125235] picpiclink
      2. Thermotoga maritima [TaxId: 2336] [102023] (8)
        1. 1r3e picpicxref
          complexed with fhu
          1. region a:238-318 [96907] picpiclink
        2. 2ab4 picpicxref
          complexed with fhu, zn; mutant
          1. region a:229-308 [126505] picpiclink
        3. 1ze1 picpicxrefxrefxrefxref
          automatically matched to d1r3ea1
          complexed with mg
          1. region a:229-308 [124962] picpiclink
        4. 1ze1 picpicxrefxrefxrefxref
          automatically matched to d1r3ea1
          complexed with mg
          1. region b:229-308 [124964] picpiclink
        5. 1ze1 picpicxrefxrefxrefxref
          automatically matched to d1r3ea1
          complexed with mg
          1. region c:229-308 [124966] picpiclink
        6. 1ze1 picpicxrefxrefxrefxref
          automatically matched to d1r3ea1
          complexed with mg
          1. region d:229-308 [124968] picpiclink
        7. 1ze2 picpicxrefxref
          automatically matched to d1r3ea1
          complexed with fhu
          1. region a:229-308 [124970] picpiclink
        8. 1ze2 picpicxrefxref
          automatically matched to d1r3ea1
          complexed with fhu
          1. region b:229-308 [124972] picpiclink
      3. Mycobacterium tuberculosis [TaxId: 1773] [102024] (1)
        1. 1sgv picpicxref
          1. region a:236-292 [98858] picpiclink
          2. region b:236-294 [98860] picpiclink
      4. Archaeon Methanococcus jannaschii [TaxId: 2190] [141698] (1)
        SQ Q57612 247-331
        1. 2apo picpicxrefxref
          complexed with k, zn
          1. region a:247-331 [127133] picpiclink
      5. Archaeon Pyrococcus furiosus [TaxId: 2261] [141699] (4)
        SQ Q7LWY0 250-333
        1. 2ey4 picpicxrefxrefxrefxrefxrefxref
          complexed with zn
          1. region a:253-336 [132578] picpiclink
        2. 2ey4 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2EY4 A:253-336
          complexed with zn
          1. region b:253-336 [132580] picpiclink
        3. 2hvy picpicxrefxrefxrefxref
          automatically matched to 2EY4 A:253-336
          complexed with atp, zn; mutant
          1. region a:253-336 [136817] picpiclink
        4. 2rfk picpicxrefxrefxref
          automatically matched to d2ey4a1
          complexed with zn; mutant
          1. region a:253-336 [151996] picpiclink
    2. Archaeosine tRNA-guanine transglycosylase, C3 domain [88701]
      the last of the 3 additional C-terminal domains to the TGT-like domain
      1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [88702] (4)
        1. 1iq8 picpicxrefxref
          complexed with mg, zn
          1. region a:506-582 [83074] picpiclink
          2. region b:506-582 [83076] picpiclink
        2. 1it7 picpicxrefxref
          complexed with gun, mg, zn
          1. region a:506-582 [83078] picpiclink
          2. region b:506-582 [83080] picpiclink
        3. 1it8 picpicxrefxref
          complexed with mg, pq0, zn
          1. region a:506-582 [83082] picpiclink
          2. region b:506-582 [83084] picpiclink
        4. 1j2b picpicxrefxref
          complexed with mg, zn
          1. region a:506-582 [84010] picpiclink
          2. region b:506-582 [84013] picpiclink
    3. Hypothetical protein Ta1423, C-terminal domain [102025]
      this protein is related to the C-terminal part (domains C2 and C3) of Archaeosine tRNA-guanine transglycosylase
      1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [102026] (1)
        1. 1q7h picpicxref
          structural genomics
          complexed with zn
          1. region a:69-153 [96042] picpiclink
    4. Nip7p homolog, C-terminal domain [110337]
      1. Human (Homo sapiens) [TaxId: 9606] [110338] (2)
        SQ Q9Y221
        1. 1sqw picpicxref
          automatically matched to d1t5ya1
          1. region a:95-170 [119033] picpiclink
        2. 1t5y picpicxref
          1. region a:95-170 [106495] picpiclink
    5. Hypothetical protein APE0525, C-terminal domain [141700]
      1. Archaeon Aeropyrum pernix [TaxId: 56636] [141701] (3)
        SQ Q9YEQ6 91-186
        1. 2cx1 picpicxref
          automatically matched to 1ZS7 A:91-186
          complexed with tla
          1. region a:91-183 [130967] picpiclink
        2. 1zs7 picpicxref
          complexed with k, po4
          1. region a:91-186 [125593] picpiclink
        3. 2cx0 picpicxref
          automatically matched to 1ZS7 A:91-186
          complexed with so4
          1. region a:91-183 [130965] picpiclink
    6. Uncharacterized protein AF0587 [159363]
      1. Archaeoglobus fulgidus [TaxId: 2234] [159364] (1)
        SQ O29668 460-527
        1. 2q07 picpicxrefxref
          1. region a:460-527 [149981] picpiclink
  2. ATP sulfurylase N-terminal domain [63801] (5)
    contains extra structures; some similarity to the PK beta-barrel domain
    1. ATP sulfurylase N-terminal domain [63802]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [63803] (8)
        1. 1g8f picpicxrefxref
          complexed with acy, ca, cd, mg, na, so4, trs
          1. region a:2-168 [60348] picpiclink
        2. 1j70 picpicxrefxref
          complexed with na, po4
          1. region a:0-168 [84118] picpiclink
          2. region b:0-168 [84121] picpiclink
          3. region c:1-168 [84124] picpiclink
        3. 1jec picpicxrefxref
          complexed with acy, ca, cd, mg, na, so4, thj
          1. region a:2-168 [66595] picpiclink
        4. 1g8g picpicxrefxref
          complexed with acy, adx, ca, cd, mg, na, trs
          1. region a:2-168 [60351] picpiclink
          2. region b:2-168 [60354] picpiclink
        5. 1g8h picpicxrefxref
          complexed with acy, adx, ca, cd, mg, na, pop
          1. region a:2-168 [60357] picpiclink
          2. region b:2-168 [60360] picpiclink
        6. 1jee picpicxrefxref
          complexed with acy, adx, ca, cd, lco, mg, na, pop, trs
          1. region a:2-168 [66604] picpiclink
          2. region b:2-168 [66607] picpiclink
        7. 1jed picpicxrefxref
          complexed with acy, adp, ca, cd, mg, na, trs
          1. region a:2-168 [66598] picpiclink
          2. region b:2-168 [66601] picpiclink
        8. 1r6x picpicxref
          complexed with co, so4
          1. region a:2-168 [97167] picpiclink
      2. Fungus (Penicillium chrysogenum) [TaxId: 5076] [63804] (2)
        1. 1m8p picpicxrefxref
          complexed with pps
          1. region a:1-170 [78777] picpiclink
          2. region b:1-170 [78780] picpiclink
          3. region c:1-170 [78783] picpiclink
        2. 1i2d picpicxrefxref
          complexed with adx
          1. region a:2-170 [61556] picpiclink
          2. region b:2-170 [61559] picpiclink
          3. region c:2-170 [61562] picpiclink
      3. Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843] [69296] (1)
        1. 1jhd picpicxref
          complexed with br, so4
          1. region a:1-173 [66712] picpiclink
      4. Thermus thermophilus [TaxId: 274] [102027] (1)
        1. 1v47 picpicxref
          complexed with adx, cl, na, zn
          1. region a:4-135 [100292] picpiclink
          2. region b:4-135 [100294] picpiclink
      5. Human (Homo sapiens) [TaxId: 9606] [141702] (6)
        SQ O43252 229-389
        1. 1x6v picpicxrefxrefxrefxref
          complexed with adp, cl
          1. region a:229-389 [121755] picpiclink
        2. 1x6v picpicxrefxrefxrefxref
          automatically matched to 1X6V A:229-389
          complexed with adp, cl
          1. region b:229-389 [121758] picpiclink
        3. 1xjq picpicxrefxrefxrefxref
          automatically matched to 1X6V A:229-389
          complexed with adp
          1. region a:229-389 [122035] picpiclink
        4. 1xjq picpicxrefxrefxrefxref
          automatically matched to 1X6V A:229-389
          complexed with adp
          1. region b:229-389 [122038] picpiclink
        5. 1xnj picpicxrefxrefxrefxref
          automatically matched to 1X6V A:229-389
          complexed with adp, adx
          1. region a:229-389 [122189] picpiclink
        6. 1xnj picpicxrefxrefxrefxref
          automatically matched to 1X6V A:229-389
          complexed with adp, adx
          1. region b:229-389 [122192] picpiclink
  3. YggJ N-terminal domain-like [89451] (3)
    1. Hypothetical protein HI0303 [89452]
      1. Haemophilus influenzae [TaxId: 727] [89453] (2)
        1. 1vhy picpicxref
          structural genomics
          1. region a:3-73 [100714] picpiclink
          2. region b:3-73 [100716] picpiclink
        2. 1nxz picpicxref
          structural genomics
          complexed with mse
          1. region a:2-73 [86391] picpiclink
          2. region b:2-73 [86393] picpiclink
    2. Hypothetical protein YqeU [102028]
      1. Bacillus subtilis [TaxId: 1423] [102029] (1)
        1. 1vhk picpicxref
          structural genomics; domains of B and D chains are partly disordered
          1. region a:2-73 [100680] picpiclink
          2. region b:2-73 [100682] picpiclink
          3. region c:2-73 [100684] picpiclink
          4. region d:2-73 [100686] picpiclink
    3. Hypothetical protein TTHA0657 (TT1575) [117346]
      1. Thermus thermophilus [TaxId: 274] [117347] (3)
        SQ Q5SKI6
        1. 1v6z picpicxref
          Structural genomics target
          1. region a:4-66 [113551] picpiclink
          2. region b:4-66 [113553] picpiclink
        2. 2cx8 picpicxref
          complexed with sah
          1. region a:4-66 [130983] picpiclink
        3. 2z0y picpicxref
          automatically matched to d1v6za1
          complexed with sam
          1. region a:5-66 [153918] picpiclink
  4. Hypothetical protein EF3133 [110339] (1)
    Pfam 06171; DUF984
    1. Hypothetical protein EF3133 [110340]
      1. Enterococcus faecalis [TaxId: 1351] [110341] (1)
        SQ Q82ZD1
        1. 1t62 picpic
          Structural genomics target
          1. chain a [106541] picpiclink
          2. chain b [106542] picpiclink
  5. Hypothetical protein TTHA0113 [117348] (1)
    Pfam 04266; DUF437
    1. Hypothetical protein TTHA0113 [117349]
      1. Thermus thermophilus [TaxId: 274] [117350] (2)
        SQ Q5SM30
        1. 2dp9 picpic
          automatically matched to d1wk2a_
          1. region a:1-120 [131609] picpiclink
        2. 1wk2 picpic
          Structural genomics target
          1. chain a [114720] picpiclink
  6. ProFAR isomerase associated domain [117351] (2)
    Pfam 07060; DUF1530
    1. Hypothetical protein PF0470 [117352]
      1. Pyrococcus furiosus [TaxId: 2261] [117353] (1)
        SQ Q8U3J6
        1. 1xne picpic
          Structural genomics target
          1. chain a [115579] picpiclink
    2. Hypothetical protein PF0455 [117354]
      1. Pyrococcus furiosus [TaxId: 2261] [117355] (1)
        SQ Q8U3L1
        1. 1s04 picpic
          Structural genomics target
          1. chain a [112002] picpiclink
  7. yqfB-like [117356] (1)
    Pfam 06164; DUF978
    1. Hypothetical protein YqfB [117357]
      1. Escherichia coli [TaxId: 562] [117358] (1)
        SQ P67603
        1. 1te7 picpic
          Structural genomics target
          1. chain a [112404] picpiclink
  8. Atu2648/PH1033-like [141703] (6)
    Pfam 01878; DUF55
    1. Hypothetical protein PP5205 [141704]
      1. Pseudomonas putida kt2440 [TaxId: 160488] [141705] (3)
        SQ Q88CH6 2-149
        1. 2g2x picpic
          complexed with so4
          1. region a:2-149 [134543] picpiclink
        2. 2g2x picpic
          automatically matched to 2G2X A:2-149
          complexed with so4
          1. region b:2-149 [134544] picpiclink
        3. 2g2x picpic
          automatically matched to 2G2X A:2-149
          complexed with so4
          1. region c:2-149 [134545] picpiclink
    2. Hypothetical protein PH1033 [141706]
      1. Pyrococcus horikoshii [TaxId: 53953] [141707] (3)
        SQ O58764 1-145
        1. 2hd9 picpic
          complexed with ca, cit, gol
          1. region a:1-145 [147268] picpiclink
        2. 2zbn picpic
          automatically matched to 2HD9 A:1-145
          1. region a:1-145 [154322] picpiclink
        3. 1wmm picpic
          1. region a:1-145 [121049] picpiclink
    3. Hypothetical protein PSPTO5229 [141708]
      PP5205 ortholog
      1. Pseudomonas syringae [TaxId: 317] [141709] (1)
        SQ Q87UR7 2-149
        1. 2eve picpic
          complexed with 144, edo, mpo
          1. region a:2-149 [132427] picpiclink
    4. Hypothetical protein RPA0253 [141710]
      1. Rhodopseudomonas palustris [TaxId: 1076] [141711] (1)
        SQ Q6ND56 2-137
        1. 2gbs picpic
          mutant
          1. region a:2-137 [134925] picpiclink
    5. Hypothetical protein Atu2648 [141712]
      1. Agrobacterium tumefaciens [TaxId: 358] [141713] (1)
        SQ Q8UC50 2-147
        1. 1zce picpic
          1. region a:2-147 [124907] picpiclink
    6. Hypothetical protein LmjF36.6870 [141714]
      1. Leishmania major [TaxId: 5664] [141715] (1)
        SQ Q4Q067 7-163
        1. 2ar1 picpic
          complexed with gol
          1. region a:7-163 [127187] picpiclink
  9. Hypothetical RNA methyltransferase domain (HRMD) [141716] (3)
    N-terminal part of Pfam 03602, structurally similar to PUA domain family
    1. Hypothetical protein TTHA1280, N-terminal domain [141717]
      1. Thermus thermophilus [TaxId: 274] [141718] (10)
        SQ Q5SIT4 1-164
        1. 1wxx picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with k, po4
          1. region a:1-64 [121418] picpiclink
        2. 1wxx picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with k, po4
          1. region b:1-64 [121420] picpiclink
        3. 1wxx picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with k, po4
          1. region c:1-64 [121422] picpiclink
        4. 1wxx picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with k, po4
          1. region d:1-64 [121424] picpiclink
        5. 1wxw picpicxrefxrefxrefxref
          complexed with hez
          1. region a:1-64 [121410] picpiclink
        6. 1wxw picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with hez
          1. region b:1-64 [121412] picpiclink
        7. 1wxw picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with hez
          1. region c:1-64 [121414] picpiclink
        8. 1wxw picpicxrefxrefxrefxref
          automatically matched to 1WXW A:1-64
          complexed with hez
          1. region d:1-64 [121416] picpiclink
        9. 2cww picpicxrefxref
          automatically matched to 1WXW A:1-64
          complexed with acy, gol, sah
          1. region a:1-64 [130952] picpiclink
        10. 2cww picpicxrefxref
          automatically matched to 1WXW A:1-64
          complexed with acy, gol, sah
          1. region b:1-64 [130954] picpiclink
    2. Hypothetical protein SMu776, N-terminal domain [141719]
      1. Streptococcus mutans [TaxId: 1309] [141720] (1)
        SQ Q8DUW5 1-68
        1. 2b78 picpicxref
          1. region a:1-68 [128025] picpiclink
    3. Hypothetical protein PH1915, N-terminal domain [141721]
      1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [141722] (2)
        SQ O59578 1-72
        1. 2as0 picpicxrefxref
          1. region a:1-72 [127227] picpiclink
        2. 2as0 picpicxrefxref
          automatically matched to 2AS0 A:1-72
          1. region b:1-72 [127229] picpiclink
  10. LON domain-like [141723] (2)
    Pfam 02190
    1. ATP-dependent protease La (Lon), N-terminal domain [141724]
      1. Escherichia coli [TaxId: 562] [141725] (8)
        SQ P0A9M0 8-117
        1. 2ane picpic
          1. region a:8-117 [127046] picpiclink
        2. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region b:10-117 [127047] picpiclink
        3. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region c:10-117 [127048] picpiclink
        4. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region d:8-117 [127049] picpiclink
        5. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region e:8-117 [127050] picpiclink
        6. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region f:8-117 [127051] picpiclink
        7. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region g:8-117 [127052] picpiclink
        8. 2ane picpic
          automatically matched to 2ANE A:8-117
          1. region h:8-116 [127053] picpiclink
    2. Hypothetical protein BPP1347 [141726]
      identical sequence to BP2131 and BB2413 from other Bordetella species
      1. Bordetella parapertussis [TaxId: 519] [141727] (2)
        SQ Q7WAM7 2-198
        1. 1zbo picpic
          1. region a:2-198 [124859] picpiclink
        2. 1zbo picpic
          automatically matched to 1ZBO A:2-198
          1. region b:2-198 [124860] picpiclink
  11. PrgU-like [159365] (1)
    Pfam 09627
    1. Uncharacterized protein PrgU [159366]
      1. Enterococcus faecalis [TaxId: 1351] [159367] (2)
        SQ Q8KUD5 12-113
        EF0006
        1. 2gmq picpic
          1. region a:12-113 [147135] picpiclink
        2. 2gmq picpic
          automatically matched to 2GMQ A:12-113
          1. region b:13-113 [147136] picpiclink
  12. SRA domain-like [159368] (2)
    Pfam 02182; recognizes the modified cytosine base (m5C) by flipping it out of DNA
    1. E3 ubiquitin-protein ligase UHRF1 [159369]
      1. Human (Homo sapiens) [TaxId: 9606] [159370] (7)
        SQ Q96T88 409-615! SQ Q96T88 414-617
        1. 3bi7 picpic
          complexed with edo, so4, unl
          1. region a:414-617 [155298] picpiclink
        2. 2pb7 picpic
          1. region a:409-615 [149351] picpiclink
        3. 3dwh picpic
          automatically matched to 3BI7 A:414-617
          complexed with gol, so4
          1. region a:414-614 [157912] picpiclink
        4. 3clz picpic
          automatically matched to 3BI7 A:414-617
          complexed with 5cm
          1. region a:416-617 [156766] picpiclink
        5. 3clz picpic
          automatically matched to 3BI7 A:414-617
          complexed with 5cm
          1. region b:415-617 [156767] picpiclink
        6. 3clz picpic
          automatically matched to 3BI7 A:414-617
          complexed with 5cm
          1. region c:416-617 [156768] picpiclink
        7. 3clz picpic
          automatically matched to 3BI7 A:414-617
          complexed with 5cm
          1. region d:416-617 [156769] picpiclink
      2. Mouse (Mus musculus) [TaxId: 10090] [159371] (7)
        SQ Q8VDF2 405-613! SQ Q8VDF2 418-625
        1. 2zkd picpic
          complexed with 5cm, act, edo
          1. region a:405-613 [154583] picpiclink
        2. 2zkd picpic
          automatically matched to 2ZKD A:405-613
          complexed with 5cm, act, edo
          1. region b:405-612 [154584] picpiclink
        3. 2zo1 picpic
          automatically matched to 2ZO0 B:418-625
          complexed with 5cm, edo
          1. region b:418-622 [154712] picpiclink
        4. 2zo0 picpic
          complexed with 5cm
          1. region b:418-625 [154711] picpiclink
        5. 2zkf picpic
          automatically matched to 2ZKD A:405-613
          complexed with 5cm
          1. region a:405-613 [154586] picpiclink
        6. 2zke picpic
          automatically matched to 2ZKD A:405-613
          complexed with 5cm
          1. region a:405-613 [154585] picpiclink
        7. 2zo2 picpic
          automatically matched to 2ZO0 B:418-625
          complexed with po4
          1. region b:418-625 [154713] picpiclink
  13. YtmB-like [159372] (1)
    PfamB 020780
    1. Hypothetical protein YtmB [159373]
      1. Bacillus subtilis [TaxId: 1423] [159374] (8)
        SQ O34365 1-80
        1. 2nwa picpic
          complexed with so4
          1. region a:1-80 [148480] picpiclink
        2. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region b:1-80 [148481] picpiclink
        3. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region c:1-80 [148482] picpiclink
        4. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region d:1-80 [148483] picpiclink
        5. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region e:1-80 [148484] picpiclink
        6. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region f:1-80 [148485] picpiclink
        7. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region g:1-80 [148486] picpiclink
        8. 2nwa picpic
          automatically matched to 2NWA A:1-80
          complexed with so4
          1. region h:1-80 [148487] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk