Structural Classification of Proteins
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Superfamily: PUA domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: PUA domain-like [88696]
    pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other
  4. Superfamily: PUA domain-like [88697]
    link to SUPERFAMILY database - Superfamily

Families:

  1. PUA domain [88698] (10)
    RNA-binding domain
    1. Pseudouridine synthase II TruB, C-terminal domain [88699]
      1. Escherichia coli [TaxId: 562] [88700] (3) picpic
      2. Thermotoga maritima [TaxId: 2336] [102023] (8) picpic
      3. Mycobacterium tuberculosis [TaxId: 1773] [102024] (1) picpic
      4. Archaeon Methanococcus jannaschii [TaxId: 2190] [141698] (1) picpic
        SQ Q57612 247-331
      5. Archaeon Pyrococcus furiosus [TaxId: 2261] [141699] (4) picpic
        SQ Q7LWY0 250-333
    2. Archaeosine tRNA-guanine transglycosylase, C3 domain [88701]
      the last of the 3 additional C-terminal domains to the TGT-like domain
      1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [88702] (4) picpic
    3. Hypothetical protein Ta1423, C-terminal domain [102025]
      this protein is related to the C-terminal part (domains C2 and C3) of Archaeosine tRNA-guanine transglycosylase
      1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [102026] (1) picpic
    4. Nip7p homolog, C-terminal domain [110337]
      1. Human (Homo sapiens) [TaxId: 9606] [110338] (2) picpic
        SQ Q9Y221
    5. Hypothetical protein APE0525, C-terminal domain [141700]
      1. Archaeon Aeropyrum pernix [TaxId: 56636] [141701] (3) picpic
        SQ Q9YEQ6 91-186
    6. Uncharacterized protein AF0587 [159363]
      1. Archaeoglobus fulgidus [TaxId: 2234] [159364] (1) picpic
        SQ O29668 460-527
  2. ATP sulfurylase N-terminal domain [63801] (5)
    contains extra structures; some similarity to the PK beta-barrel domain
    1. ATP sulfurylase N-terminal domain [63802]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [63803] (8) picpic
      2. Fungus (Penicillium chrysogenum) [TaxId: 5076] [63804] (2) picpic
      3. Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843] [69296] (1) picpic
      4. Thermus thermophilus [TaxId: 274] [102027] (1) picpic
      5. Human (Homo sapiens) [TaxId: 9606] [141702] (6) picpic
        SQ O43252 229-389
  3. YggJ N-terminal domain-like [89451] (3)
    1. Hypothetical protein HI0303 [89452]
      1. Haemophilus influenzae [TaxId: 727] [89453] (2) picpic
    2. Hypothetical protein YqeU [102028]
      1. Bacillus subtilis [TaxId: 1423] [102029] (1) picpic
    3. Hypothetical protein TTHA0657 (TT1575) [117346]
      1. Thermus thermophilus [TaxId: 274] [117347] (3) picpic
        SQ Q5SKI6
  4. Hypothetical protein EF3133 [110339] (1)
    Pfam 06171; DUF984
    1. Hypothetical protein EF3133 [110340]
      1. Enterococcus faecalis [TaxId: 1351] [110341] (1) picpic
        SQ Q82ZD1
  5. Hypothetical protein TTHA0113 [117348] (1)
    Pfam 04266; DUF437
    1. Hypothetical protein TTHA0113 [117349]
      1. Thermus thermophilus [TaxId: 274] [117350] (2) picpic
        SQ Q5SM30
  6. ProFAR isomerase associated domain [117351] (2)
    Pfam 07060; DUF1530
    1. Hypothetical protein PF0470 [117352]
      1. Pyrococcus furiosus [TaxId: 2261] [117353] (1) picpic
        SQ Q8U3J6
    2. Hypothetical protein PF0455 [117354]
      1. Pyrococcus furiosus [TaxId: 2261] [117355] (1) picpic
        SQ Q8U3L1
  7. yqfB-like [117356] (1)
    Pfam 06164; DUF978
    1. Hypothetical protein YqfB [117357]
      1. Escherichia coli [TaxId: 562] [117358] (1) picpic
        SQ P67603
  8. Atu2648/PH1033-like [141703] (6)
    Pfam 01878; DUF55
    1. Hypothetical protein PP5205 [141704]
      1. Pseudomonas putida kt2440 [TaxId: 160488] [141705] (3) picpic
        SQ Q88CH6 2-149
    2. Hypothetical protein PH1033 [141706]
      1. Pyrococcus horikoshii [TaxId: 53953] [141707] (3) picpic
        SQ O58764 1-145
    3. Hypothetical protein PSPTO5229 [141708]
      PP5205 ortholog
      1. Pseudomonas syringae [TaxId: 317] [141709] (1) picpic
        SQ Q87UR7 2-149
    4. Hypothetical protein RPA0253 [141710]
      1. Rhodopseudomonas palustris [TaxId: 1076] [141711] (1) picpic
        SQ Q6ND56 2-137
    5. Hypothetical protein Atu2648 [141712]
      1. Agrobacterium tumefaciens [TaxId: 358] [141713] (1) picpic
        SQ Q8UC50 2-147
    6. Hypothetical protein LmjF36.6870 [141714]
      1. Leishmania major [TaxId: 5664] [141715] (1) picpic
        SQ Q4Q067 7-163
  9. Hypothetical RNA methyltransferase domain (HRMD) [141716] (3)
    N-terminal part of Pfam 03602, structurally similar to PUA domain family
    1. Hypothetical protein TTHA1280, N-terminal domain [141717]
      1. Thermus thermophilus [TaxId: 274] [141718] (10) picpic
        SQ Q5SIT4 1-164
    2. Hypothetical protein SMu776, N-terminal domain [141719]
      1. Streptococcus mutans [TaxId: 1309] [141720] (1) picpic
        SQ Q8DUW5 1-68
    3. Hypothetical protein PH1915, N-terminal domain [141721]
      1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [141722] (2) picpic
        SQ O59578 1-72
  10. LON domain-like [141723] (2)
    Pfam 02190
    1. ATP-dependent protease La (Lon), N-terminal domain [141724]
      1. Escherichia coli [TaxId: 562] [141725] (8) picpic
        SQ P0A9M0 8-117
    2. Hypothetical protein BPP1347 [141726]
      identical sequence to BP2131 and BB2413 from other Bordetella species
      1. Bordetella parapertussis [TaxId: 519] [141727] (2) picpic
        SQ Q7WAM7 2-198
  11. PrgU-like [159365] (1)
    Pfam 09627
    1. Uncharacterized protein PrgU [159366]
      1. Enterococcus faecalis [TaxId: 1351] [159367] (2) picpic
        SQ Q8KUD5 12-113
        EF0006
  12. SRA domain-like [159368] (2)
    Pfam 02182; recognizes the modified cytosine base (m5C) by flipping it out of DNA
    1. E3 ubiquitin-protein ligase UHRF1 [159369]
      1. Human (Homo sapiens) [TaxId: 9606] [159370] (7) picpic
        SQ Q96T88 409-615! SQ Q96T88 414-617
      2. Mouse (Mus musculus) [TaxId: 10090] [159371] (7) picpic
        SQ Q8VDF2 405-613! SQ Q8VDF2 418-625
  13. YtmB-like [159372] (1)
    PfamB 020780
    1. Hypothetical protein YtmB [159373]
      1. Bacillus subtilis [TaxId: 1423] [159374] (8) picpic
        SQ O34365 1-80
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk