Structural Classification of Proteins

Superfamily: Carbohydrate-binding domain

: uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379]
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
Superfamily: Carbohydrate-binding domain [49384]
uperfamily

Families:

Cellulose-binding domain family II [49385] (2)
1. Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD [49386]
  belongs to subfamily IIa
  1. Cellulomonas fimi [TaxId: 1708] [49387] (2)
    1. 1exh
      1. chain a [22386]
    2. 1exg
      1. chain a [22387]
2. Endo-1,4-beta xylanase D, xylan binding domain, XBD [49388]
  belongs to subfamily IIb
  1. Cellulomonas fimi [TaxId: 1708] [49389] (6)
    1. 1e5b
      XBD1
      mutant
      1. chain a [59263]
    2. 2xbd
      XBD1
      1. chain a [22388]
    3. 1xbd
      XBD1
      1. chain a [22389]
    4. 1e5c
      XBD1
      mutant
      1. chain a [59264]
    5. 1hej
      XBD2
      1. chain c [60973]
    6. 1heh
      XBD2
      1. chain c [60972]
Cellulose-binding domain family III [49390] (11)
Pfam 00963
1. Cellusomal scaffolding protein A, scaffoldin [49391]
  1. Clostridium thermocellum [TaxId: 1515] [49392] (1)
    1. 1nbc
      complexed with ca
      1. chain a [22390]
      2. chain b [22391]
  2. Clostridium cellulolyticum [TaxId: 1521] [49393] (1)
    1. 1g43
      complexed with ca, zn
      1. chain a [22392]
2. Endo/exocellulase:cellobiose E-4, C-terminal domain [49394]
  1. Thermomonospora fusca [TaxId: 2021] [49395] (4)
    1. 1tf4
      complexed with ca
      1. region a:461-605 [22393]
      2. region b:461-605 [22394]
    2. 1js4
      complexed with ca, glc
      1. region a:461-605 [22395]
      2. region b:461-605 [22396]
    3. 4tf4
      complexed with ca, glc
      1. region a:461-605 [22397]
      2. region b:461-605 [22398]
    4. 3tf4
      complexed with ca, glc
      1. region a:461-605 [22399]
      2. region b:461-605 [22400]
  2. Clostridium cellulolyticum, atcc 35319 [TaxId: 1521] [89209] (4)
    endoglucanase 9G
    1. 1g87
      complexed with ca, cry, edo, mg
      1. region a:457-614 [83276]
      2. region b:457-614 [83278]
    2. 1ga2
      complexed with acy, ca, cry, glc, mg
      1. region a:457-614 [83282]
      2. region b:457-614 [83284]
    3. 1k72
      complexed with ca, cbi, cry, glc, mg, sch
      1. region a:457-614 [84310]
      2. region b:457-614 [84312]
    4. 1kfg
      complexed with ca, cry, glc, gs1, gs4, mg, ni, trs
      1. region a:457-614 [84388]
      2. region b:457-614 [84390]
3. Cohesin domain [49396]
  1. Clostridium thermocellum, cellulosome, various modules [TaxId: 1515] [49397] (6)
    1. 1aoh
      cohesin domain from scaffolding protein CipA
      1. chain a [22401]
      2. chain b [22402]
    2. 2ccl
      automatically matched to d1ohza_
      complexed with ca, po4; mutant
      1. region a:5-144 [130248]
    3. 2ccl
      automatically matched to d1ohza_
      complexed with ca, po4; mutant
      1. region c:5-144 [130249]
    4. 1anu
      cohesin-2 domain of cellulosome
      1. chain a [22403]
    5. 1g1k
      cohesin domain of cellulosome
      1. chain a [22404]
      2. chain b [22405]
    6. 1ohz
      complexed with dockerin domain
      complexed with ca, cl, edo, no3
      1. chain a [93043]
  2. Clostridium cellulolyticum [TaxId: 1521] [158919] (3)
    1. 2vn6
      automatically matched to d1g1ka_
      complexed with ca; mutant
      1. region a:12-152 [153332]
    2. 2vn5
      automatically matched to d1g1ka_
      complexed with ca
      1. region a:12-152 [153330]
    3. 2vn5
      automatically matched to d1g1ka_
      complexed with ca
      1. region c:12-152 [153331]
4. Cellulosomal scaffoldin adaptor protein B, ScaB [110073]
  1. Acetivibrio cellulolyticus [TaxId: 35830] [110074] (2)
    SQ Q7WYN3 29-199
    1. 1zv9
      automatically matched to d1qzna_
      complexed with acy, edo, fmt, no3, pdo; mutant
      1. region a:3-173 [125700]
    2. 1qzn
      1. chain a [104669]
5. Cellulosomal scaffoldin ScaA [141076]
  1. Bacteroides cellulosolvens [TaxId: 35825] [141077] (1)
    SQ Q9FDJ9 2073-2242
    1. 1tyj
      complexed with edo, moh
      1. region a:2-171 [119390]
6. Scaffolding dockerin binding protein A, SdbA [141078]
  1. Clostridium thermocellum [TaxId: 1515] [141079] (2)
    SQ P71143 30-191! SQ P71143 30-195
    1. 2bm3
      complexed with ipa
      1. region a:5-166 [128762]
    2. 2b59
      complexed with ca
      1. region a:17-182 [127879]
7. Exo-alpha-sialidase [158920]
  pre C-terminal domain
  1. Clostridium perfringens [TaxId: 1502] [158921] (1)
    SQ Q0TTQ4 945-1080
    1. 2vo8
      1. region a:939-1074 [153361]
8. O-GlcNAcase NagJ [158922]
  pre C-terminal domain
  1. Clostridium perfringens [TaxId: 1502] [158923] (5)
    SQ Q0TR53 768-909! SQ Q0TR53 774-906
    1. 2ozn
      complexed with ca, cl
      1. region a:774-906 [149117]
    2. 2jh2
      1. region a:7-139 [148053]
    3. 2jh2
      automatically matched to 2JH2 A:7-139
      1. region b:7-139 [148054]
    4. 2jh2
      automatically matched to 2JH2 A:7-139
      1. region c:8-137 [148055]
    5. 2o4e
      1. region a:24-165 [148583]
Bacterial chitobiase, n-terminal domain [49398] (1)
1. Bacterial chitobiase, n-terminal domain [49399]
  1. Serratia marcescens [TaxId: 615] [49400] (4)
    1. 1qba
      complexed with so4
      1. region a:28-200 [22406]
    2. 1c7s
      complexed with cbs, so4; mutant
      1. region a:28-200 [22408]
    3. 1qbb
      complexed with cbs, so4
      1. region a:28-200 [22407]
    4. 1c7t
      complexed with cbs, so4; mutant
      1. region a:28-200 [22409]