Structural Classification of Proteins
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Superfamily: Starch-binding domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Prealbumin-like [49451]
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands to common fold
  4. Superfamily: Starch-binding domain-like [49452]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Rhamnogalacturonase B, RhgB, middle domain [110091] (1)
    1. Rhamnogalacturonase B, RhgB, middle domain [110092]
      1. Aspergillus aculeatus [TaxId: 5053] [110093] (1)
        SQ Q00019
        1. 1nkg picpicxrefxref
          complexed with ca, so4
          1. region a:251-337 [103859] picpiclink
  2. Starch-binding domain [49453] (8)
    1. Cyclodextrin glycosyltransferase, C-terminal domain [49454]
      this domain is the last one in the protein chain
      1. Bacillus circulans, different strains [TaxId: 1397] [49455] (36)
        1. 1cxl picpicxrefxrefxref
          complexed with ca, g4d, glc, glf, mpd; mutant
          1. region a:584-686 [22498] picpiclink
        2. 1ot1 picpicxrefxrefxref
          complexed with acy, ca, epe, glc, mal, mpd; mutant
          1. region a:582-686 [87393] picpiclink
        3. 1pj9 picpicxrefxrefxref
          complexed with acy, ca, glc, mal, mpd; mutant
          1. region a:582-686 [94755] picpiclink
        4. 1kcl picpicxrefxrefxref
          complexed with ca, glc, mal, mpd; mutant
          1. region a:582-686 [68446] picpiclink
        5. 1ot2 picpicxrefxrefxref
          complexed with acy, ca, epe, glc, mal, mpd; mutant
          1. region a:582-686 [87397] picpiclink
        6. 1uks picpicxrefxrefxref
          complexed with aci, ca, glb, glc, gld; mutant
          1. region a:582-686 [99518] picpiclink
          2. region b:582-686 [99522] picpiclink
        7. 1cgt picpicxrefxrefxref
          complexed with ca
          1. region a:580-684 [22484] picpiclink
        8. 1eo5 picpicxrefxrefxref
          complexed with ca, glc, mpd; mutant
          1. region a:584-686 [22497] picpiclink
        9. 1d3c picpicxrefxrefxref
          1. region a:584-686 [22496] picpiclink
        10. 1cdg picpicxrefxrefxref
          complexed with ca, mal
          1. region a:582-686 [22485] picpiclink
        11. 1ukq picpicxrefxrefxref
          complexed with aci, ca, glb, glc, gld
          1. region a:582-686 [99510] picpiclink
          2. region b:582-686 [99514] picpiclink
        12. 1pez picpicxrefxrefxref
          complexed with acy, ca, epe, glc, mal, mpd; mutant
          1. region a:582-686 [94601] picpiclink
        13. 1cxe picpicxrefxrefxref
          complexed with ca, glc, mal
          1. region a:582-686 [22486] picpiclink
        14. 1cxk picpicxrefxrefxref
          complexed with ca, glc; mutant
          1. region a:584-686 [22504] picpiclink
        15. 1kck picpicxrefxrefxref
          complexed with adh, ca, glc, glw; mutant
          1. region a:582-686 [68442] picpiclink
        16. 9cgt picpicxrefxrefxref
          complexed with ca, tm5; mutant
          1. region a:580-684 [22499] picpiclink
        17. 1cxi picpicxrefxrefxref
          complexed with ca, mal
          1. region a:582-686 [22487] picpiclink
        18. 8cgt picpicxrefxrefxref
          complexed with ca, tm6; mutant
          1. region a:580-684 [22500] picpiclink
        19. 1ukt picpicxrefxrefxref
          complexed with aci, ca, glb, glc, gld; mutant
          1. region a:582-686 [99526] picpiclink
          2. region b:582-686 [99530] picpiclink
        20. 1cgv picpicxrefxrefxref
          complexed with ca, mal; mutant
          1. region a:582-686 [22489] picpiclink
        21. 1cgx picpicxrefxrefxref
          complexed with ca, mal; mutant
          1. region a:582-686 [22501] picpiclink
        22. 3cgt picpicxrefxrefxref
          complexed with bcd, ca; mutant
          1. region a:582-684 [22488] picpiclink
        23. 1cxh picpicxrefxrefxref
          complexed with ca, glc, mal
          1. region a:582-686 [22490] picpiclink
        24. 1cgw picpicxrefxrefxref
          complexed with ca, mal; mutant
          1. region a:582-686 [22491] picpiclink
        25. 1cgy picpicxrefxrefxref
          complexed with ca, mal; mutant
          1. region a:582-686 [22492] picpiclink
        26. 5cgt picpicxrefxrefxref
          complexed with ca, glc; mutant
          1. region a:582-684 [22493] picpiclink
        27. 2dij picpicxrefxrefxref
          complexed with aci, ca, glc, gld; mutant
          1. region a:584-686 [22505] picpiclink
        28. 1cxf picpicxrefxrefxref
          complexed with acx, ca, glc, mal; mutant
          1. region a:582-686 [22510] picpiclink
        29. 1dtu picpicxrefxrefxref
          complexed with aci, ca, glc, gld; mutant
          1. region a:584-686 [22509] picpiclink
        30. 2cxg picpicxrefxrefxref
          complexed with aci, ca, glc, gld
          1. region a:582-686 [22508] picpiclink
        31. 6cgt picpicxrefxrefxref
          complexed with ca, dag, glc, opg; mutant
          1. region a:580-684 [22506] picpiclink
        32. 1tcm picpicxrefxrefxref
          complexed with ca; mutant
          1. region a:582-686 [22502] picpiclink
          2. region b:582-686 [22503] picpiclink
        33. 1cgu picpicxrefxrefxref
          complexed with ca, glc; mutant
          1. region a:580-684 [22507] picpiclink
        34. 4cgt picpicxrefxrefxref
          complexed with ca; mutant
          1. region a:582-684 [22494] picpiclink
        35. 1eo7 picpicxrefxrefxref
          complexed with ca, glc; mutant
          1. region a:584-686 [22511] picpiclink
        36. 7cgt picpicxrefxrefxref
          complexed with ca; mutant
          1. region a:582-684 [22495] picpiclink
      2. Bacillus stearothermophilus [TaxId: 1422] [49456] (1)
        1. 1cyg picpicxrefxrefxref
          complexed with ca
          1. region a:575-680 [22512] picpiclink
      3. Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422] [49457] (2)
        1. 1qho picpicxrefxrefxref
          complexed with abd, ca, mal, so4
          1. region a:577-686 [22513] picpiclink
        2. 1qhp picpicxrefxrefxref
          complexed with ca, mal, so4
          1. region a:577-686 [22514] picpiclink
      4. Bacillus sp., strain 1011 [TaxId: 1409] [49458] (8)
        SQ P05618
        1. 1pam picpicxrefxrefxref
          complexed with ca
          1. region a:583-686 [22515] picpiclink
          2. region b:583-686 [22516] picpiclink
        2. 1i75 picpicxrefxrefxref
          complexed with ca, noj
          1. region a:583-686 [61870] picpiclink
          2. region b:583-686 [61874] picpiclink
        3. 1v3k picpicxrefxrefxref
          complexed with ca; mutant
          1. region a:583-686 [108314] picpiclink
          2. region b:583-686 [108318] picpiclink
        4. 1d7f picpicxrefxrefxref
          complexed with ca; mutant
          1. region a:583-686 [22517] picpiclink
          2. region b:583-686 [22518] picpiclink
        5. 1v3m picpicxrefxrefxref
          complexed with aci, ca, glb, glc, gld; mutant
          1. region a:583-686 [108330] picpiclink
          2. region b:583-686 [108334] picpiclink
        6. 1v3j picpicxrefxrefxref
          complexed with ca; mutant
          1. region a:583-686 [108306] picpiclink
          2. region b:583-686 [108310] picpiclink
        7. 1v3l picpicxrefxrefxref
          complexed with aci, ca, glb, glc, gld; mutant
          1. region a:583-686 [108322] picpiclink
          2. region b:583-686 [108326] picpiclink
        8. 1ded picpicxrefxrefxref
          complexed with acr, ca; mutant
          1. region a:583-686 [22519] picpiclink
          2. region b:583-686 [22520] picpiclink
      5. Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950] [49459] (2)
        1. 1ciu picpicxrefxrefxref
          complexed with ca
          1. region a:579-683 [22521] picpiclink
        2. 1a47 picpicxrefxrefxref
          complexed with ca, cyl, glc, gld, gte
          1. region a:579-683 [22522] picpiclink
      6. Thermoanaerobacterium [TaxId: 28895] [158931] (2)
        1. 3bmv picpicxrefxrefxref
          automatically matched to d1a47a2
          complexed with ca, gol, so4; mutant
          1. region a:579-683 [155417] picpiclink
        2. 3bmw picpicxrefxrefxref
          automatically matched to d1a47a2
          complexed with aci, ca, cl, g6d, glc, gol, so4; mutant
          1. region a:579-683 [155421] picpiclink
    2. Glucoamylase, granular starch-binding domain [49460]
      1. Aspergillus niger [TaxId: 5061] [49461] (4)
        1. 1kul picpic
          1. chain a [22523] picpiclink
        2. 1acz picpic
          complexed with glc
          1. chain a [22524] picpiclink
        3. 1kum picpic
          1. chain a [22525] picpiclink
        4. 1ac0 picpic
          complexed with glc
          1. chain a [22526] picpiclink
    3. beta-amylase [49462]
      1. Bacillus cereus [TaxId: 1396] [49463] (15)
        1. 1vem picpicxref
          automatically matched to d1b90a1
          complexed with ca, glc
          1. region a:418-516 [120021] picpiclink
        2. 1j18 picpicxref
          complexed with acy, ca, glc, so4
          1. region a:418-516 [83956] picpiclink
        3. 1itc picpicxref
          complexed with acy, ca, glc, so4; mutant
          1. region a:418-516 [83705] picpiclink
        4. 1j0y picpicxref
          complexed with ca, glc
          1. region a:418-516 [83916] picpiclink
          2. region b:418-516 [83918] picpiclink
          3. region c:418-516 [83920] picpiclink
          4. region d:418-516 [83922] picpiclink
        5. 1ven picpicxref
          automatically matched to d1b90a1
          complexed with ca, glc; mutant
          1. region a:418-516 [120023] picpiclink
        6. 1j11 picpicxref
          complexed with ca, epg
          1. region a:418-516 [83940] picpiclink
          2. region b:418-516 [83942] picpiclink
          3. region c:418-516 [83944] picpiclink
          4. region d:418-516 [83946] picpiclink
        7. 1vep picpicxref
          automatically matched to d1b90a1
          complexed with ca, glc; mutant
          1. region a:418-516 [120027] picpiclink
        8. 1j10 picpicxref
          complexed with ca, glc, xys
          1. region a:418-516 [83932] picpiclink
          2. region b:418-516 [83934] picpiclink
          3. region c:418-516 [83936] picpiclink
          4. region d:418-516 [83938] picpiclink
        9. 1veo picpicxref
          automatically matched to d1b90a1
          complexed with ca, glc; mutant
          1. region a:418-516 [120025] picpiclink
        10. 1j12 picpicxref
          complexed with ca, ebg
          1. region a:418-516 [83948] picpiclink
          2. region b:418-516 [83950] picpiclink
          3. region c:418-516 [83952] picpiclink
          4. region d:418-516 [83954] picpiclink
        11. 1j0z picpicxref
          complexed with ca, glc
          1. region a:418-516 [83924] picpiclink
          2. region b:418-516 [83926] picpiclink
          3. region c:418-516 [83928] picpiclink
          4. region d:418-516 [83930] picpiclink
        12. 1b9z picpicxref
          complexed with act, ca, mal, so4
          1. region a:418-516 [22528] picpiclink
        13. 1cqy picpic
          1. chain a [22527] picpiclink
        14. 5bca picpicxref
          complexed with ca
          1. region a:418-516 [22529] picpiclink
          2. region b:418-516 [22530] picpiclink
          3. region c:418-516 [22531] picpiclink
          4. region d:418-516 [22532] picpiclink
        15. 1b90 picpicxref
          complexed with act, ca, so4
          1. region a:418-516 [22533] picpiclink
  3. PUD-like [158932] (4)
    Pfam 03714; bacterial pullanase-associated domain
    1. Pullulanase PulA [158933]
      1. Klebsiella pneumoniae [TaxId: 573] [158934] (3)
        SQ P07206 39-169
        1. 2fhf picpicxrefxrefxrefxref
          complexed with ca, glc; mutant
          1. region a:32-162 [147037] picpiclink
        2. 2fhb picpicxrefxrefxrefxref
          automatically matched to 2FHF A:32-162
          complexed with ca, glc; mutant
          1. region a:32-162 [147027] picpiclink
        3. 2fhc picpicxrefxrefxrefxref
          automatically matched to 2FHF A:32-162
          complexed with ca, glc; mutant
          1. region a:32-162 [147032] picpiclink
      2. Streptococcus pneumoniae [TaxId: 1313] [158935] (2)
        SQ Q97SQ7 135-237! SQ Q97SQ7 238-353
        1. 2j44 picpic
          2nd PUD
          complexed with glc, zn
          1. region a:110-223 [147868] picpiclink
        2. 2j44 picpic
          1st PUD
          complexed with glc, zn
          1. region a:7-109 [147869] picpiclink
      3. Streptococcus pyogenes [TaxId: 1314] [158936] (4)
        SQ Q1JEU6 105-211! SQ Q1JEU6 212-323
        1. 2j43 picpic
          1st PUD
          1. region a:5-111 [147864] picpiclink
        2. 2j43 picpic
          2nd PUD
          1. region a:112-223 [147865] picpiclink
        3. 2j43 picpic
          automatically matched to 2J43 A:5-111
          1. region b:7-112 [147866] picpiclink
        4. 2j43 picpic
          automatically matched to 2J43 A:112-223
          1. region b:113-224 [147867] picpiclink
      4. Thermotoga maritima [TaxId: 2336] [158937] (5)
        SQ O33840 19-102
        1. 2j73 picpic
          automatically matched to 2J71 A:5-106
          complexed with glc
          1. region a:6-107 [147899] picpiclink
        2. 2j73 picpic
          automatically matched to 2J71 A:5-106
          complexed with glc
          1. region b:6-107 [147900] picpiclink
        3. 2j72 picpic
          automatically matched to 2J71 A:5-106
          complexed with glc
          1. region a:6-107 [147897] picpiclink
        4. 2j72 picpic
          automatically matched to 2J71 A:5-106
          complexed with glc
          1. region b:6-107 [147898] picpiclink
        5. 2j71 picpic
          1. region a:5-106 [147896] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk