Structural Classification of Proteins
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Family: Family 6 carbohydrate binding module, CBM6

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Galactose-binding domain-like [49784]
    sandwich; 9 strands in 2 sheets; jelly-roll
  4. Superfamily: Galactose-binding domain-like [49785]
    link to SUPERFAMILY database - Superfamily
  5. Family: Family 6 carbohydrate binding module, CBM6 [69213]

Protein Domains:

  1. Carbohydrate binding module from xylanase U [69214]
    1. Clostridium thermocellum [TaxId: 1515] [69215] (2)
      1. 1uxx picpic
        complexed with ca, xyp
        1. chain x [100169] picpiclink
      2. 1gmm picpic
        complexed with ca, na, so4
        1. chain a [65314] picpiclink
  2. Cellulase B (lichenase 5a) [101583]
    1. Cellvibrio mixtus [TaxId: 39650] [101584] (6)
      1. 1uxz picpic
        CBM6-2
        1. chain a [100170] picpiclink
        2. chain b [100171] picpiclink
      2. 1uyy picpic
        CBM6-2; complexed with cellotriose
        complexed with bgc, ca
        1. chain a [100212] picpiclink
        2. chain b [100213] picpiclink
      3. 1uyx picpic
        CBM6-2; complexed with cellobiose
        complexed with bgc, ca
        1. chain a [100210] picpiclink
        2. chain b [100211] picpiclink
      4. 1uyz picpic
        CBM6-2; complexed with xylotetraose
        complexed with ca, gol, na, xyp
        1. chain a [100214] picpiclink
        2. chain b [100215] picpiclink
      5. 1uy0 picpic
        CBM6-2; complexed with glc-1,3-glc-1,4-glc-1,3-glc
        complexed with bgc, ca, cl, gol, na
        1. chain a [100172] picpiclink
        2. chain b [100173] picpiclink
      6. 1uz0 picpic
        CBM6-2; complexed with glc-4glc-3glc-4glc
        complexed with bgc, ca, cl, gol
        1. chain a [100216] picpiclink
  3. Putative xylanase [89239]
    1. Clostridium stercorarium [TaxId: 1510] [89240] (8)
      SQ P33558 243-374, 384-512
      1. 1od3 picpic
        CBM6-3, in complex with laminaribiose
        complexed with acy, bgc, ca
        1. chain a [86825] picpiclink
      2. 1o8s picpic
        CBM6-3, in complex with cellobiose
        complexed with bgc, ca
        1. chain a [86678] picpiclink
      3. 1uy4 picpic
        CBM6-2
        complexed with ca, gol, na, xyp
        1. chain a [108131] picpiclink
      4. 1uy2 picpic
        CBM6-2
        complexed with ca, gol, na, xyp
        1. chain a [108129] picpiclink
      5. 1uy1 picpic
        CBM6-2
        complexed with ca, gol, na
        1. chain a [108128] picpiclink
      6. 1uy3 picpic
        CBM6-2
        complexed with ca, gol, na, xyp
        1. chain a [108130] picpiclink
      7. 1nae picpic
        third CBM6 module, CBM6-3, in complex with xylotriose
        complexed with ca, xys; mutant
        1. chain a [85486] picpiclink
      8. 1o8p picpic
        CBM6-3, unbound
        complexed with ca
        1. chain a [86668] picpiclink
  4. Hypothetical protein BH0236 [117106]
    1. Bacillus halodurans [TaxId: 86665] [117107] (3)
      SQ Q9KG76 790-923
      1. 1w9s picpic
        complexed with gol, na
        1. chain a [114416] picpiclink
        2. chain b [114417] picpiclink
      2. 1w9t picpic
        complexed with na, xyp, xys
        1. chain a [114418] picpiclink
        2. chain b [114419] picpiclink
      3. 1w9w picpic
        complexed with bgc, glc, na
        1. chain a [114424] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk