Fold: TNF-like

sandwich, 10 strands in 2 sheets; jelly-roll

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: TNF-like [49841]
   sandwich, 10 strands in 2 sheets; jelly-roll

Superfamilies:

1. TNF-like [49842] (1)
   uperfamily
   1. TNF-like [49843] (18)
      1. Extracellular domain of CD40 ligand [49844]
         1. Human (Homo sapiens) [TaxId: 9606] [49845] (2)
            1. 1aly
               1. chain a [23856]
            2. 1i9r
               complexed with zn
               1. chain a [71148]
               2. chain b [71149]
               3. chain c [71150]
      2. 30 kDa adipocyte complement-related protein [49846]
         1. Mouse (Mus musculus) [TaxId: 10090] [49847] (2)
            1. 1c3h
               complexed with ca
               1. chain a [90405]
               2. chain b [90406]
               3. chain c [90407]
               4. chain d [90408]
               5. chain e [90409]
               6. chain f [90410]
            2. 1c28
               1. chain a [23857]
               2. chain b [23858]
               3. chain c [23859]
      3. Tumor necrosis factor (TNF) [49848]
         1. Human (Homo sapiens) [TaxId: 9606] [49849] (10)
            1. 4tsv
               mutant
               1. chain a [23860]
            2. 2az5
               automatically matched to d1tnfa_
               complexed with 307
               1. region a:10-157 [127599]
            3. 2az5
               automatically matched to d1tnfa_
               complexed with 307
               1. region b:10-157 [127600]
            4. 2az5
               automatically matched to d1tnfa_
               complexed with 307
               1. region c:10-157 [127601]
            5. 2az5
               automatically matched to d1tnfa_
               complexed with 307
               1. region d:10-157 [127602]
            6. 1tnr
               1. chain a [23867]
            7. 5tsw
               mutant
               1. chain a [23861]
               2. chain b [23862]
               3. chain c [23863]
               4. chain d [23864]
               5. chain e [23865]
               6. chain f [23866]
            8. 1a8m
               mutant
               1. chain a [23868]
               2. chain b [23869]
               3. chain c [23870]
            9. 1tnf
               1. chain a [23871]
               2. chain b [23872]
               3. chain c [23873]
            10. 2tun
                mutant
                1. chain a [23874]
                2. chain b [23875]
                3. chain c [23876]
                4. chain d [23877]
                5. chain e [23878]
                6. chain f [23879]
         2. Mouse (Mus musculus) [TaxId: 10090] [49850] (1)
            1. 2tnf
               complexed with ipa, trs
               1. chain a [23880]
               2. chain b [23881]
               3. chain c [23882]
      4. Apoptosis-2 ligand, apo2l/TRAIL [49851]
         1. Human (Homo sapiens) [TaxId: 9606] [49852] (5)
            1. 1dg6
               1. chain a [23883]
            2. 1d0g
               complexed with cl, zn
               1. chain a [23885]
               2. chain b [23886]
               3. chain d [23887]
            3. 1d4v
               1. chain b [23884]
            4. 1du3
               complexed with zn
               1. chain d [23888]
               2. chain e [23889]
               3. chain f [23890]
               4. chain j [23891]
               5. chain k [23892]
               6. chain l [23893]
            5. 1d2q
               1. chain a [23894]
      5. TRANCE/RANKL cytokine [63721]
         1. Mouse (Mus musculus) [TaxId: 10090] [63722] (5)
            1. 1s55
               automatically matched to d1iqaa_
               complexed with cl
               1. region a:161-316 [118865]
            2. 1s55
               automatically matched to d1iqaa_
               complexed with cl
               1. region b:161-316 [118866]
            3. 1s55
               automatically matched to d1iqaa_
               complexed with cl
               1. region c:161-316 [118867]
            4. 1iqa
               complexed with mse; mutant
               1. chain a [71274]
               2. chain b [71275]
               3. chain c [71276]
            5. 1jtz
               1. chain x [63286]
               2. chain y [63287]
               3. chain z [63288]
      6. Soluble part of TALL-1, sTALL-1 (BAFF) [69228]
         1. Human (Homo sapiens) [TaxId: 9606] [69229] (6)
            also includes the PDB entry (1otz) that together with the entry (1p0t) provides the multimeric structure of the complex of this protein with its receptor, BAFF-R. In these entries protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
            1. 1kxg
               complexed with cit, dio, mg
               1. chain a [73145]
               2. chain b [73146]
               3. chain c [73147]
               4. chain d [73148]
               5. chain e [73149]
               6. chain f [73150]
            2. 1oqe
               1. chain a [87286]
               2. chain b [87287]
               3. chain c [87288]
               4. chain d [87289]
               5. chain e [87290]
               6. chain f [87291]
               7. chain g [87292]
               8. chain h [87293]
               9. chain i [87294]
               10. chain j [87295]
            3. 1kd7
               1. chain a [77331]
               2. chain b [77332]
               3. chain c [77333]
               4. chain k [77334]
               5. chain l [77335]
               6. chain m [77336]
            4. 1oqd
               1. chain a [87268]
               2. chain b [87269]
               3. chain c [87270]
               4. chain d [87271]
               5. chain e [87272]
               6. chain f [87273]
               7. chain g [87274]
               8. chain h [87275]
               9. chain i [87276]
               10. chain j [87277]
            5. 1osg
               complexed with a br3 derived peptide; chains G, H, I, J, K and L
               complexed with mg
               1. chain a [87381]
               2. chain b [87382]
               3. chain c [87383]
               4. chain d [87384]
               5. chain e [87385]
               6. chain f [87386]
            6. 1jh5
               1. chain a [66697]
               2. chain b [66698]
               3. chain c [66699]
               4. chain d [66700]
               5. chain e [66701]
               6. chain f [66702]
               7. chain g [66703]
               8. chain h [66704]
               9. chain i [66705]
               10. chain j [66706]
      7. Ectodysplasin A, Eda-a1 [101610]
         1. Human (Homo sapiens) [TaxId: 9606] [101611] (2)
            1. 1rj8
               1. chain a [97547]
               2. chain b [97548]
               3. chain d [97549]
               4. chain e [97550]
               5. chain f [97551]
               6. chain g [97552]
            2. 1rj7
               1. chain a [97535]
               2. chain b [97536]
               3. chain d [97537]
               4. chain e [97538]
               5. chain f [97539]
               6. chain g [97540]
               7. chain h [97541]
               8. chain i [97542]
               9. chain j [97543]
               10. chain k [97544]
               11. chain l [97545]
               12. chain m [97546]
      8. Collagen NC1 trimerisation domain [69230]
         1. Human (Homo sapiens), isoform X [TaxId: 9606] [69231] (1)
            1. 1gr3
               complexed with ca, cps, na
               1. chain a [65476]
         2. Mouse (Mus musculus), isoform VIII [TaxId: 10090] [101612] (1)
            1. 1o91
               complexed with cps, so4
               1. chain a [92656]
               2. chain b [92657]
               3. chain c [92658]
      9. Complement c1q globular head, A chain [101613]
         hetrotrimer of A, B and C chains
         1. Human (Homo sapiens) [TaxId: 9606] [101614] (5)
            1. 1pk6
               complexed with ca
               1. chain a [94801]
            2. 2jg8
               automatically matched to d1pk6a_
               complexed with ca, nag
               1. region a:90-222 [148039]
            3. 2jg8
               automatically matched to d1pk6a_
               complexed with ca, nag
               1. region d:90-222 [148042]
            4. 2jg9
               automatically matched to d1pk6a_
               complexed with ca
               1. region a:90-222 [148045]
            5. 2jg9
               automatically matched to d1pk6a_
               complexed with ca
               1. region d:90-222 [148048]
      10. Complement c1q globular head, B chain [101615]
          hetrotrimer of A, B and C chains
          1. Human (Homo sapiens) [TaxId: 9606] [101616] (5)
             1. 1pk6
                complexed with ca
                1. chain b [94802]
             2. 2jg8
                automatically matched to d1pk6b_
                complexed with ca, nag
                1. region b:92-223 [148040]
             3. 2jg8
                automatically matched to d1pk6b_
                complexed with ca, nag
                1. region e:92-223 [148043]
             4. 2jg9
                automatically matched to d1pk6b_
                complexed with ca
                1. region b:92-223 [148046]
             5. 2jg9
                automatically matched to d1pk6b_
                complexed with ca
                1. region e:92-223 [148049]
      11. Complement c1q globular head, C chain [101617]
          hetrotrimer of A, B and C chains
          1. Human (Homo sapiens) [TaxId: 9606] [101618] (5)
             1. 1pk6
                complexed with ca
                1. chain c [94803]
             2. 2jg8
                automatically matched to d1pk6c_
                complexed with ca, nag
                1. region c:89-217 [148041]
             3. 2jg8
                automatically matched to d1pk6c_
                complexed with ca, nag
                1. region f:89-217 [148044]
             4. 2jg9
                automatically matched to d1pk6c_
                complexed with ca
                1. region c:89-217 [148047]
             5. 2jg9
                automatically matched to d1pk6c_
                complexed with ca
                1. region f:89-217 [148050]
      12. A proliferation-inducing ligand, APRIL [117117]
          1. Mouse (Mus musculus) [TaxId: 10090] [117118] (5)
             SQ Q9D777 105-251 ! SQ Q9D777 105-241
             1. 1xu1
                complexed with ni
                1. chain a [116033]
                2. chain b [116034]
                3. chain d [116035]
             2. 1u5x
                1. chain a [113055]
             3. 1xu2
                complexed with ni
                1. chain a [116039]
                2. chain b [116040]
                3. chain d [116041]
             4. 1u5z
                complexed with ni
                1. chain a [113059]
             5. 1u5y
                1. chain a [113056]
                2. chain b [113057]
                3. chain d [113058]
      13. Tumor necrosis factor ligand superfamily member 4, OX40L [141127]
          1. Human (Homo sapiens) [TaxId: 9606] [141128] (1)
             SQ P23510 58-183
             1. 2hev
                complexed with nag; mutant
                1. region f:58-183 [136360]
          2. Mouse (Mus musculus) [TaxId: 10090] [141129] (3)
             SQ P43488 58-185
             1. 2hew
                complexed with nag, so4
                1. region f:58-185 [136364]
             2. 2hey
                automatically matched to 2HEW F:58-185
                complexed with so4
                1. region f:58-185 [136365]
             3. 2hey
                automatically matched to 2HEW F:58-185
                complexed with so4
                1. region g:58-185 [136366]
      14. Glucocorticoid-induced TNF-related ligand, TNFSF18 [158982]
          1. Mouse (Mus musculus) [TaxId: 10090] [158983] (6)
             SQ Q7TS55 51-173! SQ Q80YG2 49-173
             1. 2q8o
                1. region a:49-173 [150129]
             2. 2q8o
                automatically matched to 2Q8O A:49-173
                1. region b:49-173 [150130]
             3. 2qdn
                1. region a:51-173 [150670]
             4. 2qdn
                automatically matched to 2QDN A:51-173
                1. region b:51-173 [150671]
             5. 3b9i
                automatically matched to 2QDN A:51-173
                1. region a:51-173 [154998]
             6. 3b9i
                automatically matched to 2QDN A:51-173
                1. region b:51-173 [154999]
          2. Human (Homo sapiens) [TaxId: 9606] [158984] (10)
             SQ Q9UNG2 55-177! SQ Q9UNG2 57-172! SQ Q9UNG2 57-176
             1. 2q1m
                1. region a:57-172 [149998]
             2. 3b93
                1. region a:55-177 [154987]
             3. 3b93
                automatically matched to 3B93 A:55-177
                1. region b:57-177 [154988]
             4. 3b93
                automatically matched to 3B93 A:55-177
                1. region c:57-176 [154989]
             5. 3b94
                automatically matched to 3B93 A:55-177
                1. region a:56-175 [154990]
             6. 3b94
                automatically matched to 3B93 A:55-177
                1. region b:57-175 [154991]
             7. 3b94
                automatically matched to 3B93 A:55-177
                1. region c:57-176 [154992]
             8. 3b94
                automatically matched to 3B93 A:55-177
                1. region d:56-175 [154993]
             9. 2r30
                mutant
                1. region a:57-172 [151545]
             10. 2r32
                 chimera with a GCN4 helix (excluded)
                 complexed with so4
                 1. region a:57-176 [151547]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk