Structural Classification of Proteins

Superfamily: TNF-like

: uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: TNF-like [49841]
sandwich, 10 strands in 2 sheets; jelly-roll
Superfamily: TNF-like [49842]
uperfamily

Families:

TNF-like [49843] (18)
1. Extracellular domain of CD40 ligand [49844]
  1. Human (Homo sapiens) [TaxId: 9606] [49845] (2)
    1. 1aly
      1. chain a [23856]
    2. 1i9r
      complexed with zn
      1. chain a [71148]
      2. chain b [71149]
      3. chain c [71150]
2. 30 kDa adipocyte complement-related protein [49846]
  1. Mouse (Mus musculus) [TaxId: 10090] [49847] (2)
    1. 1c3h
      complexed with ca
      1. chain a [90405]
      2. chain b [90406]
      3. chain c [90407]
      4. chain d [90408]
      5. chain e [90409]
      6. chain f [90410]
    2. 1c28
      1. chain a [23857]
      2. chain b [23858]
      3. chain c [23859]
3. Tumor necrosis factor (TNF) [49848]
  1. Human (Homo sapiens) [TaxId: 9606] [49849] (10)
    1. 4tsv
      mutant
      1. chain a [23860]
    2. 2az5
      automatically matched to d1tnfa_
      complexed with 307
      1. region a:10-157 [127599]
    3. 2az5
      automatically matched to d1tnfa_
      complexed with 307
      1. region b:10-157 [127600]
    4. 2az5
      automatically matched to d1tnfa_
      complexed with 307
      1. region c:10-157 [127601]
    5. 2az5
      automatically matched to d1tnfa_
      complexed with 307
      1. region d:10-157 [127602]
    6. 1tnr
      1. chain a [23867]
    7. 5tsw
      mutant
      1. chain a [23861]
      2. chain b [23862]
      3. chain c [23863]
      4. chain d [23864]
      5. chain e [23865]
      6. chain f [23866]
    8. 1a8m
      mutant
      1. chain a [23868]
      2. chain b [23869]
      3. chain c [23870]
    9. 1tnf
      1. chain a [23871]
      2. chain b [23872]
      3. chain c [23873]
    10. 2tun
      mutant
      1. chain a [23874]
      2. chain b [23875]
      3. chain c [23876]
      4. chain d [23877]
      5. chain e [23878]
      6. chain f [23879]
  2. Mouse (Mus musculus) [TaxId: 10090] [49850] (1)
    1. 2tnf
      complexed with ipa, trs
      1. chain a [23880]
      2. chain b [23881]
      3. chain c [23882]
4. Apoptosis-2 ligand, apo2l/TRAIL [49851]
  1. Human (Homo sapiens) [TaxId: 9606] [49852] (5)
    1. 1dg6
      1. chain a [23883]
    2. 1d0g
      complexed with cl, zn
      1. chain a [23885]
      2. chain b [23886]
      3. chain d [23887]
    3. 1d4v
      1. chain b [23884]
    4. 1du3
      complexed with zn
      1. chain d [23888]
      2. chain e [23889]
      3. chain f [23890]
      4. chain j [23891]
      5. chain k [23892]
      6. chain l [23893]
    5. 1d2q
      1. chain a [23894]
5. TRANCE/RANKL cytokine [63721]
  1. Mouse (Mus musculus) [TaxId: 10090] [63722] (5)
    1. 1s55
      automatically matched to d1iqaa_
      complexed with cl
      1. region a:161-316 [118865]
    2. 1s55
      automatically matched to d1iqaa_
      complexed with cl
      1. region b:161-316 [118866]
    3. 1s55
      automatically matched to d1iqaa_
      complexed with cl
      1. region c:161-316 [118867]
    4. 1iqa
      complexed with mse; mutant
      1. chain a [71274]
      2. chain b [71275]
      3. chain c [71276]
    5. 1jtz
      1. chain x [63286]
      2. chain y [63287]
      3. chain z [63288]
6. Soluble part of TALL-1, sTALL-1 (BAFF) [69228]
  1. Human (Homo sapiens) [TaxId: 9606] [69229] (6)
    also includes the PDB entry (1otz) that together with the entry (1p0t) provides the multimeric structure of the complex of this protein with its receptor, BAFF-R. In these entries protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
    1. 1kxg
      complexed with cit, dio, mg
      1. chain a [73145]
      2. chain b [73146]
      3. chain c [73147]
      4. chain d [73148]
      5. chain e [73149]
      6. chain f [73150]
    2. 1oqe
      1. chain a [87286]
      2. chain b [87287]
      3. chain c [87288]
      4. chain d [87289]
      5. chain e [87290]
      6. chain f [87291]
      7. chain g [87292]
      8. chain h [87293]
      9. chain i [87294]
      10. chain j [87295]
    3. 1kd7
      1. chain a [77331]
      2. chain b [77332]
      3. chain c [77333]
      4. chain k [77334]
      5. chain l [77335]
      6. chain m [77336]
    4. 1oqd
      1. chain a [87268]
      2. chain b [87269]
      3. chain c [87270]
      4. chain d [87271]
      5. chain e [87272]
      6. chain f [87273]
      7. chain g [87274]
      8. chain h [87275]
      9. chain i [87276]
      10. chain j [87277]
    5. 1osg
      complexed with a br3 derived peptide; chains G, H, I, J, K and L
      complexed with mg
      1. chain a [87381]
      2. chain b [87382]
      3. chain c [87383]
      4. chain d [87384]
      5. chain e [87385]
      6. chain f [87386]
    6. 1jh5
      1. chain a [66697]
      2. chain b [66698]
      3. chain c [66699]
      4. chain d [66700]
      5. chain e [66701]
      6. chain f [66702]
      7. chain g [66703]
      8. chain h [66704]
      9. chain i [66705]
      10. chain j [66706]
7. Ectodysplasin A, Eda-a1 [101610]
  1. Human (Homo sapiens) [TaxId: 9606] [101611] (2)
    1. 1rj8
      1. chain a [97547]
      2. chain b [97548]
      3. chain d [97549]
      4. chain e [97550]
      5. chain f [97551]
      6. chain g [97552]
    2. 1rj7
      1. chain a [97535]
      2. chain b [97536]
      3. chain d [97537]
      4. chain e [97538]
      5. chain f [97539]
      6. chain g [97540]
      7. chain h [97541]
      8. chain i [97542]
      9. chain j [97543]
      10. chain k [97544]
      11. chain l [97545]
      12. chain m [97546]
8. Collagen NC1 trimerisation domain [69230]
  1. Human (Homo sapiens), isoform X [TaxId: 9606] [69231] (1)
    1. 1gr3
      complexed with ca, cps, na
      1. chain a [65476]
  2. Mouse (Mus musculus), isoform VIII [TaxId: 10090] [101612] (1)
    1. 1o91
      complexed with cps, so4
      1. chain a [92656]
      2. chain b [92657]
      3. chain c [92658]
9. Complement c1q globular head, A chain [101613]
  hetrotrimer of A, B and C chains
  1. Human (Homo sapiens) [TaxId: 9606] [101614] (5)
    1. 1pk6
      complexed with ca
      1. chain a [94801]
    2. 2jg8
      automatically matched to d1pk6a_
      complexed with ca, nag
      1. region a:90-222 [148039]
    3. 2jg8
      automatically matched to d1pk6a_
      complexed with ca, nag
      1. region d:90-222 [148042]
    4. 2jg9
      automatically matched to d1pk6a_
      complexed with ca
      1. region a:90-222 [148045]
    5. 2jg9
      automatically matched to d1pk6a_
      complexed with ca
      1. region d:90-222 [148048]
10. Complement c1q globular head, B chain [101615]
  hetrotrimer of A, B and C chains
  1. Human (Homo sapiens) [TaxId: 9606] [101616] (5)
    1. 1pk6
      complexed with ca
      1. chain b [94802]
    2. 2jg8
      automatically matched to d1pk6b_
      complexed with ca, nag
      1. region b:92-223 [148040]
    3. 2jg8
      automatically matched to d1pk6b_
      complexed with ca, nag
      1. region e:92-223 [148043]
    4. 2jg9
      automatically matched to d1pk6b_
      complexed with ca
      1. region b:92-223 [148046]
    5. 2jg9
      automatically matched to d1pk6b_
      complexed with ca
      1. region e:92-223 [148049]
11. Complement c1q globular head, C chain [101617]
  hetrotrimer of A, B and C chains
  1. Human (Homo sapiens) [TaxId: 9606] [101618] (5)
    1. 1pk6
      complexed with ca
      1. chain c [94803]
    2. 2jg8
      automatically matched to d1pk6c_
      complexed with ca, nag
      1. region c:89-217 [148041]
    3. 2jg8
      automatically matched to d1pk6c_
      complexed with ca, nag
      1. region f:89-217 [148044]
    4. 2jg9
      automatically matched to d1pk6c_
      complexed with ca
      1. region c:89-217 [148047]
    5. 2jg9
      automatically matched to d1pk6c_
      complexed with ca
      1. region f:89-217 [148050]
12. A proliferation-inducing ligand, APRIL [117117]
  1. Mouse (Mus musculus) [TaxId: 10090] [117118] (5)
    SQ Q9D777 105-251 ! SQ Q9D777 105-241
    1. 1xu1
      complexed with ni
      1. chain a [116033]
      2. chain b [116034]
      3. chain d [116035]
    2. 1u5x
      1. chain a [113055]
    3. 1xu2
      complexed with ni
      1. chain a [116039]
      2. chain b [116040]
      3. chain d [116041]
    4. 1u5z
      complexed with ni
      1. chain a [113059]
    5. 1u5y
      1. chain a [113056]
      2. chain b [113057]
      3. chain d [113058]
13. Tumor necrosis factor ligand superfamily member 4, OX40L [141127]
  1. Human (Homo sapiens) [TaxId: 9606] [141128] (1)
    SQ P23510 58-183
    1. 2hev
      complexed with nag; mutant
      1. region f:58-183 [136360]
  2. Mouse (Mus musculus) [TaxId: 10090] [141129] (3)
    SQ P43488 58-185
    1. 2hew
      complexed with nag, so4
      1. region f:58-185 [136364]
    2. 2hey
      automatically matched to 2HEW F:58-185
      complexed with so4
      1. region f:58-185 [136365]
    3. 2hey
      automatically matched to 2HEW F:58-185
      complexed with so4
      1. region g:58-185 [136366]
14. Glucocorticoid-induced TNF-related ligand, TNFSF18 [158982]
  1. Mouse (Mus musculus) [TaxId: 10090] [158983] (6)
    SQ Q7TS55 51-173! SQ Q80YG2 49-173
    1. 2q8o
      1. region a:49-173 [150129]
    2. 2q8o
      automatically matched to 2Q8O A:49-173
      1. region b:49-173 [150130]
    3. 2qdn
      1. region a:51-173 [150670]
    4. 2qdn
      automatically matched to 2QDN A:51-173
      1. region b:51-173 [150671]
    5. 3b9i
      automatically matched to 2QDN A:51-173
      1. region a:51-173 [154998]
    6. 3b9i
      automatically matched to 2QDN A:51-173
      1. region b:51-173 [154999]
  2. Human (Homo sapiens) [TaxId: 9606] [158984] (10)
    SQ Q9UNG2 55-177! SQ Q9UNG2 57-172! SQ Q9UNG2 57-176
    1. 2q1m
      1. region a:57-172 [149998]
    2. 3b93
      1. region a:55-177 [154987]
    3. 3b93
      automatically matched to 3B93 A:55-177
      1. region b:57-177 [154988]
    4. 3b93
      automatically matched to 3B93 A:55-177
      1. region c:57-176 [154989]
    5. 3b94
      automatically matched to 3B93 A:55-177
      1. region a:56-175 [154990]
    6. 3b94
      automatically matched to 3B93 A:55-177
      1. region b:57-175 [154991]
    7. 3b94
      automatically matched to 3B93 A:55-177
      1. region c:57-176 [154992]
    8. 3b94
      automatically matched to 3B93 A:55-177
      1. region d:56-175 [154993]
    9. 2r30
      mutant
      1. region a:57-172 [151545]
    10. 2r32
      chimera with a GCN4 helix (excluded)
      complexed with so4
      1. region a:57-176 [151547]