Structural Classification of Proteins
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Family: TNF-like

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: TNF-like [49841]
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. Superfamily: TNF-like [49842]
    link to SUPERFAMILY database - Superfamily
  5. Family: TNF-like [49843]

Protein Domains:

  1. Extracellular domain of CD40 ligand [49844]
    1. Human (Homo sapiens) [TaxId: 9606] [49845] (2)
      1. 1aly picpic
        1. chain a [23856] picpiclink
      2. 1i9r picpicxrefxrefxrefxref
        complexed with zn
        1. chain a [71148] picpiclink
        2. chain b [71149] picpiclink
        3. chain c [71150] picpiclink
  2. 30 kDa adipocyte complement-related protein [49846]
    1. Mouse (Mus musculus) [TaxId: 10090] [49847] (2)
      1. 1c3h picpic
        complexed with ca
        1. chain a [90405] picpiclink
        2. chain b [90406] picpiclink
        3. chain c [90407] picpiclink
        4. chain d [90408] picpiclink
        5. chain e [90409] picpiclink
        6. chain f [90410] picpiclink
      2. 1c28 picpic
        1. chain a [23857] picpiclink
        2. chain b [23858] picpiclink
        3. chain c [23859] picpiclink
  3. Tumor necrosis factor (TNF) [49848]
    1. Human (Homo sapiens) [TaxId: 9606] [49849] (10)
      1. 4tsv picpic
        mutant
        1. chain a [23860] picpiclink
      2. 2az5 picpic
        automatically matched to d1tnfa_
        complexed with 307
        1. region a:10-157 [127599] picpiclink
      3. 2az5 picpic
        automatically matched to d1tnfa_
        complexed with 307
        1. region b:10-157 [127600] picpiclink
      4. 2az5 picpic
        automatically matched to d1tnfa_
        complexed with 307
        1. region c:10-157 [127601] picpiclink
      5. 2az5 picpic
        automatically matched to d1tnfa_
        complexed with 307
        1. region d:10-157 [127602] picpiclink
      6. 1tnr picpicxref
        1. chain a [23867] picpiclink
      7. 5tsw picpic
        mutant
        1. chain a [23861] picpiclink
        2. chain b [23862] picpiclink
        3. chain c [23863] picpiclink
        4. chain d [23864] picpiclink
        5. chain e [23865] picpiclink
        6. chain f [23866] picpiclink
      8. 1a8m picpic
        mutant
        1. chain a [23868] picpiclink
        2. chain b [23869] picpiclink
        3. chain c [23870] picpiclink
      9. 1tnf picpic
        1. chain a [23871] picpiclink
        2. chain b [23872] picpiclink
        3. chain c [23873] picpiclink
      10. 2tun picpic
        mutant
        1. chain a [23874] picpiclink
        2. chain b [23875] picpiclink
        3. chain c [23876] picpiclink
        4. chain d [23877] picpiclink
        5. chain e [23878] picpiclink
        6. chain f [23879] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [49850] (1)
      1. 2tnf picpic
        complexed with ipa, trs
        1. chain a [23880] picpiclink
        2. chain b [23881] picpiclink
        3. chain c [23882] picpiclink
  4. Apoptosis-2 ligand, apo2l/TRAIL [49851]
    1. Human (Homo sapiens) [TaxId: 9606] [49852] (5)
      1. 1dg6 picpic
        1. chain a [23883] picpiclink
      2. 1d0g picpicxref
        complexed with cl, zn
        1. chain a [23885] picpiclink
        2. chain b [23886] picpiclink
        3. chain d [23887] picpiclink
      3. 1d4v picpicxref
        1. chain b [23884] picpiclink
      4. 1du3 picpicxref
        complexed with zn
        1. chain d [23888] picpiclink
        2. chain e [23889] picpiclink
        3. chain f [23890] picpiclink
        4. chain j [23891] picpiclink
        5. chain k [23892] picpiclink
        6. chain l [23893] picpiclink
      5. 1d2q picpic
        1. chain a [23894] picpiclink
  5. TRANCE/RANKL cytokine [63721]
    1. Mouse (Mus musculus) [TaxId: 10090] [63722] (5)
      1. 1s55 picpic
        automatically matched to d1iqaa_
        complexed with cl
        1. region a:161-316 [118865] picpiclink
      2. 1s55 picpic
        automatically matched to d1iqaa_
        complexed with cl
        1. region b:161-316 [118866] picpiclink
      3. 1s55 picpic
        automatically matched to d1iqaa_
        complexed with cl
        1. region c:161-316 [118867] picpiclink
      4. 1iqa picpic
        complexed with mse; mutant
        1. chain a [71274] picpiclink
        2. chain b [71275] picpiclink
        3. chain c [71276] picpiclink
      5. 1jtz picpic
        1. chain x [63286] picpiclink
        2. chain y [63287] picpiclink
        3. chain z [63288] picpiclink
  6. Soluble part of TALL-1, sTALL-1 (BAFF) [69228]
    1. Human (Homo sapiens) [TaxId: 9606] [69229] (6)
      also includes the PDB entry (1otz) that together with the entry (1p0t) provides the multimeric structure of the complex of this protein with its receptor, BAFF-R. In these entries protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
      1. 1kxg picpic
        complexed with cit, dio, mg
        1. chain a [73145] picpiclink
        2. chain b [73146] picpiclink
        3. chain c [73147] picpiclink
        4. chain d [73148] picpiclink
        5. chain e [73149] picpiclink
        6. chain f [73150] picpiclink
      2. 1oqe picpicxref
        1. chain a [87286] picpiclink
        2. chain b [87287] picpiclink
        3. chain c [87288] picpiclink
        4. chain d [87289] picpiclink
        5. chain e [87290] picpiclink
        6. chain f [87291] picpiclink
        7. chain g [87292] picpiclink
        8. chain h [87293] picpiclink
        9. chain i [87294] picpiclink
        10. chain j [87295] picpiclink
      3. 1kd7 picpic
        1. chain a [77331] picpiclink
        2. chain b [77332] picpiclink
        3. chain c [77333] picpiclink
        4. chain k [77334] picpiclink
        5. chain l [77335] picpiclink
        6. chain m [77336] picpiclink
      4. 1oqd picpicxref
        1. chain a [87268] picpiclink
        2. chain b [87269] picpiclink
        3. chain c [87270] picpiclink
        4. chain d [87271] picpiclink
        5. chain e [87272] picpiclink
        6. chain f [87273] picpiclink
        7. chain g [87274] picpiclink
        8. chain h [87275] picpiclink
        9. chain i [87276] picpiclink
        10. chain j [87277] picpiclink
      5. 1osg picpic
        complexed with a br3 derived peptide; chains G, H, I, J, K and L
        complexed with mg
        1. chain a [87381] picpiclink
        2. chain b [87382] picpiclink
        3. chain c [87383] picpiclink
        4. chain d [87384] picpiclink
        5. chain e [87385] picpiclink
        6. chain f [87386] picpiclink
      6. 1jh5 picpic
        1. chain a [66697] picpiclink
        2. chain b [66698] picpiclink
        3. chain c [66699] picpiclink
        4. chain d [66700] picpiclink
        5. chain e [66701] picpiclink
        6. chain f [66702] picpiclink
        7. chain g [66703] picpiclink
        8. chain h [66704] picpiclink
        9. chain i [66705] picpiclink
        10. chain j [66706] picpiclink
  7. Ectodysplasin A, Eda-a1 [101610]
    1. Human (Homo sapiens) [TaxId: 9606] [101611] (2)
      1. 1rj8 picpic
        1. chain a [97547] picpiclink
        2. chain b [97548] picpiclink
        3. chain d [97549] picpiclink
        4. chain e [97550] picpiclink
        5. chain f [97551] picpiclink
        6. chain g [97552] picpiclink
      2. 1rj7 picpic
        1. chain a [97535] picpiclink
        2. chain b [97536] picpiclink
        3. chain d [97537] picpiclink
        4. chain e [97538] picpiclink
        5. chain f [97539] picpiclink
        6. chain g [97540] picpiclink
        7. chain h [97541] picpiclink
        8. chain i [97542] picpiclink
        9. chain j [97543] picpiclink
        10. chain k [97544] picpiclink
        11. chain l [97545] picpiclink
        12. chain m [97546] picpiclink
  8. Collagen NC1 trimerisation domain [69230]
    1. Human (Homo sapiens), isoform X [TaxId: 9606] [69231] (1)
      1. 1gr3 picpic
        complexed with ca, cps, na
        1. chain a [65476] picpiclink
    2. Mouse (Mus musculus), isoform VIII [TaxId: 10090] [101612] (1)
      1. 1o91 picpic
        complexed with cps, so4
        1. chain a [92656] picpiclink
        2. chain b [92657] picpiclink
        3. chain c [92658] picpiclink
  9. Complement c1q globular head, A chain [101613]
    hetrotrimer of A, B and C chains
    1. Human (Homo sapiens) [TaxId: 9606] [101614] (5)
      1. 1pk6 picpicxrefxref
        complexed with ca
        1. chain a [94801] picpiclink
      2. 2jg8 picpicxrefxrefxrefxref
        automatically matched to d1pk6a_
        complexed with ca, nag
        1. region a:90-222 [148039] picpiclink
      3. 2jg8 picpicxrefxrefxrefxref
        automatically matched to d1pk6a_
        complexed with ca, nag
        1. region d:90-222 [148042] picpiclink
      4. 2jg9 picpicxrefxrefxrefxref
        automatically matched to d1pk6a_
        complexed with ca
        1. region a:90-222 [148045] picpiclink
      5. 2jg9 picpicxrefxrefxrefxref
        automatically matched to d1pk6a_
        complexed with ca
        1. region d:90-222 [148048] picpiclink
  10. Complement c1q globular head, B chain [101615]
    hetrotrimer of A, B and C chains
    1. Human (Homo sapiens) [TaxId: 9606] [101616] (5)
      1. 1pk6 picpicxrefxref
        complexed with ca
        1. chain b [94802] picpiclink
      2. 2jg8 picpicxrefxrefxrefxref
        automatically matched to d1pk6b_
        complexed with ca, nag
        1. region b:92-223 [148040] picpiclink
      3. 2jg8 picpicxrefxrefxrefxref
        automatically matched to d1pk6b_
        complexed with ca, nag
        1. region e:92-223 [148043] picpiclink
      4. 2jg9 picpicxrefxrefxrefxref
        automatically matched to d1pk6b_
        complexed with ca
        1. region b:92-223 [148046] picpiclink
      5. 2jg9 picpicxrefxrefxrefxref
        automatically matched to d1pk6b_
        complexed with ca
        1. region e:92-223 [148049] picpiclink
  11. Complement c1q globular head, C chain [101617]
    hetrotrimer of A, B and C chains
    1. Human (Homo sapiens) [TaxId: 9606] [101618] (5)
      1. 1pk6 picpicxrefxref
        complexed with ca
        1. chain c [94803] picpiclink
      2. 2jg8 picpicxrefxrefxrefxref
        automatically matched to d1pk6c_
        complexed with ca, nag
        1. region c:89-217 [148041] picpiclink
      3. 2jg8 picpicxrefxrefxrefxref
        automatically matched to d1pk6c_
        complexed with ca, nag
        1. region f:89-217 [148044] picpiclink
      4. 2jg9 picpicxrefxrefxrefxref
        automatically matched to d1pk6c_
        complexed with ca
        1. region c:89-217 [148047] picpiclink
      5. 2jg9 picpicxrefxrefxrefxref
        automatically matched to d1pk6c_
        complexed with ca
        1. region f:89-217 [148050] picpiclink
  12. A proliferation-inducing ligand, APRIL [117117]
    1. Mouse (Mus musculus) [TaxId: 10090] [117118] (5)
      SQ Q9D777 105-251 ! SQ Q9D777 105-241
      1. 1xu1 picpicxref
        complexed with ni
        1. chain a [116033] picpiclink
        2. chain b [116034] picpiclink
        3. chain d [116035] picpiclink
      2. 1u5x picpic
        1. chain a [113055] picpiclink
      3. 1xu2 picpicxref
        complexed with ni
        1. chain a [116039] picpiclink
        2. chain b [116040] picpiclink
        3. chain d [116041] picpiclink
      4. 1u5z picpic
        complexed with ni
        1. chain a [113059] picpiclink
      5. 1u5y picpic
        1. chain a [113056] picpiclink
        2. chain b [113057] picpiclink
        3. chain d [113058] picpiclink
  13. Tumor necrosis factor ligand superfamily member 4, OX40L [141127]
    1. Human (Homo sapiens) [TaxId: 9606] [141128] (1)
      SQ P23510 58-183
      1. 2hev picpicxrefxrefxref
        complexed with nag; mutant
        1. region f:58-183 [136360] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [141129] (3)
      SQ P43488 58-185
      1. 2hew picpic
        complexed with nag, so4
        1. region f:58-185 [136364] picpiclink
      2. 2hey picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2HEW F:58-185
        complexed with so4
        1. region f:58-185 [136365] picpiclink
      3. 2hey picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2HEW F:58-185
        complexed with so4
        1. region g:58-185 [136366] picpiclink
  14. Glucocorticoid-induced TNF-related ligand, TNFSF18 [158982]
    1. Mouse (Mus musculus) [TaxId: 10090] [158983] (6)
      SQ Q7TS55 51-173! SQ Q80YG2 49-173
      1. 2q8o picpic
        1. region a:49-173 [150129] picpiclink
      2. 2q8o picpic
        automatically matched to 2Q8O A:49-173
        1. region b:49-173 [150130] picpiclink
      3. 2qdn picpic
        1. region a:51-173 [150670] picpiclink
      4. 2qdn picpic
        automatically matched to 2QDN A:51-173
        1. region b:51-173 [150671] picpiclink
      5. 3b9i picpic
        automatically matched to 2QDN A:51-173
        1. region a:51-173 [154998] picpiclink
      6. 3b9i picpic
        automatically matched to 2QDN A:51-173
        1. region b:51-173 [154999] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [158984] (10)
      SQ Q9UNG2 55-177! SQ Q9UNG2 57-172! SQ Q9UNG2 57-176
      1. 2q1m picpic
        1. region a:57-172 [149998] picpiclink
      2. 3b93 picpic
        1. region a:55-177 [154987] picpiclink
      3. 3b93 picpic
        automatically matched to 3B93 A:55-177
        1. region b:57-177 [154988] picpiclink
      4. 3b93 picpic
        automatically matched to 3B93 A:55-177
        1. region c:57-176 [154989] picpiclink
      5. 3b94 picpic
        automatically matched to 3B93 A:55-177
        1. region a:56-175 [154990] picpiclink
      6. 3b94 picpic
        automatically matched to 3B93 A:55-177
        1. region b:57-175 [154991] picpiclink
      7. 3b94 picpic
        automatically matched to 3B93 A:55-177
        1. region c:57-176 [154992] picpiclink
      8. 3b94 picpic
        automatically matched to 3B93 A:55-177
        1. region d:56-175 [154993] picpiclink
      9. 2r30 picpic
        mutant
        1. region a:57-172 [151545] picpiclink
      10. 2r32 picpic
        chimera with a GCN4 helix (excluded)
        complexed with so4
        1. region a:57-176 [151547] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk