Structural Classification of Proteins
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Fold: CUB-like

sandwich, 10 strands in 2 sheets; jelly-roll

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: CUB-like [49853]
    sandwich, 10 strands in 2 sheets; jelly-roll

Superfamilies:

  1. Spermadhesin, CUB domain [49854] (1)
    link to SUPERFAMILY database - Superfamily
    1. Spermadhesin, CUB domain [49855] (6)
      1. Acidic seminal fluid protein (ASFP) [49856]
        1. Cow (Bos taurus) [TaxId: 9913] [49857] (1)
          1. 1sfp picpic
            1. chain a [23895] picpiclink
      2. Major seminal plasma glycoprotein PSP-I [49858]
        1. Pig (Sus scrofa) [TaxId: 9823] [49859] (1)
          1. 1spp picpicxref
            1. chain a [23896] picpiclink
      3. Major seminal plasma glycoprotein PSP-II [49860]
        1. Pig (Sus scrofa) [TaxId: 9823] [49861] (1)
          1. 1spp picpicxref
            1. chain b [23897] picpiclink
      4. Mannose-binding protein associated serine protease 2, MASP2 [89256]
        duplication: contains two CUB domains separated by an EGF-like domain
        1. Rat (Rattus norvegicus) [TaxId: 10116] [89257] (1)
          1. 1nt0 picpicxref
            complexed with ahb, ca, edo, nag
            1. region a:5-119 [86143] picpiclink
            2. region a:165-278 [86144] picpiclink
            3. region g:5-119 [86146] picpiclink
            4. region g:165-278 [86147] picpiclink
        2. Human (Homo sapiens) [TaxId: 9606] [110137] (2)
          SQ O00187 17-181
          1. 2qqm picpicxrefxref
            automatically matched to d1szba1
            complexed with ca, edo, fuc, nag
            1. region a:156-263 [151222] picpiclink
          2. 1szb picpicxref
            complexed with ca
            1. region a:3-123 [106145] picpiclink
            2. region b:3-123 [106147] picpiclink
      5. Complement C1S component [89258]
        1. Human (Homo sapiens) [TaxId: 9606] [89259] (1)
          1. 1nzi picpicxref
            complexed with ca, mg
            1. region a:1-117 [86449] picpiclink
            2. region b:3-117 [86451] picpiclink
  2. Collagen-binding domain [89260] (1)
    N-terminal strand appears only in calcium-free form
    link to SUPERFAMILY database - Superfamily
    1. Collagen-binding domain [89261] (1)
      1. Class 1 collagenase [89262]
        1. Bacteria (Clostridium histolyticum) [TaxId: 1498] [89263] (4)
          1. 1nqj picpic
            complexed with cl, li
            1. chain a [86031] picpiclink
            2. chain b [86032] picpiclink
          2. 2o8o picpic
            automatically matched to d1nqdb_
            complexed with ca, cl
            1. region a:896-1008 [148677] picpiclink
          3. 2o8o picpic
            automatically matched to d1nqdb_
            complexed with ca, cl
            1. region b:1896-2008 [148678] picpiclink
          4. 1nqd picpic
            complexed with ca
            1. chain a [86025] picpiclink
            2. chain b [86026] picpiclink
  3. Acetamidase/Formamidase-like [141130] (1)
    decorated fold with additional structures; contains extra C-terminal alpha+beta subdomain: beta(2)-alpha(2)-beta(2): antiparallel beta-sheet, order 1243
    link to SUPERFAMILY database - Superfamily
    1. Acetamidase/Formamidase-like [141131] (1)
      Pfam 03069
      1. Putative acetamidase TM0119 [141132]
        1. Thermotoga maritima [TaxId: 2336] [141133] (4)
          SQ Q9WXX3 1-283
          1. 2f4l picpic
            complexed with cl, zn
            1. region a:1-283 [132927] picpiclink
          2. 2f4l picpic
            automatically matched to 2F4L A:1-283
            complexed with cl, zn
            1. region b:1-283 [132928] picpiclink
          3. 2f4l picpic
            automatically matched to 2F4L A:1-283
            complexed with cl, zn
            1. region c:1-283 [132929] picpiclink
          4. 2f4l picpic
            automatically matched to 2F4L A:1-283
            complexed with cl, zn
            1. region d:1-283 [132930] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk