Structural Classification of Proteins
Family: PDZ domain
Pfam 00595
Lineage:
Root:
scop
Class:
All beta proteins
[48724]
Fold:
PDZ domain-like
[50155]
contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
Superfamily:
PDZ domain-like
[50156]
peptide-binding domain
uperfamily
Family:
PDZ domain
[50157]
Pfam 00595
Protein Domains:
Discs large protein homolog [50158]
Human (Homo sapiens)
[TaxId: 9606]
[50159] (4)
1pdr
third PDZ domain
chain a
[24771]
2i0i
automatically matched to d1pdr__
region a:462-542
[136953]
2i0i
automatically matched to d1pdr__
region b:462-542
[136954]
2i0i
automatically matched to d1pdr__
region c:462-542
[136955]
Cask/Lin-2 [50160]
Human (Homo sapiens)
[TaxId: 9606]
[50161] (1)
1kwa
complexed with so4
chain a
[24772]
chain b
[24773]
Synapse-associated protein 102 [101713]
Human (Homo sapiens)
[TaxId: 9606]
[101714] (2)
2fe5
2nd PDZ domain
complexed with gol, so4
region a:223-314
[133323]
1um7
third PDZ domain
chain a
[99579]
Synaptic protein PSD-95 [50162]
Synonym: synapse associated protein 90, sap90
duplication: contains three PDZ domains
Rat (Rattus norvegicus)
[TaxId: 10116]
[50163] (9)
SQ
P31016
62-154
1tp5
automatically matched to 1TP3 A:302-403
region a:302-403
[119305]
1tq3
automatically matched to 1TP3 A:302-403
region a:306-403
[119310]
1be9
third PDZ domain
chain a
[24774]
1tp3
region a:302-403
[119304]
1bfe
third PDZ domain
chain a
[24775]
1rgr
complexed with bal; mutant
chain a
[104931]
1qlc
second PDZ domain
chain a
[24776]
1iu0
first PDZ domain
chain a
[83707]
1iu2
first PDZ domain
chain a
[83708]
Human (Homo sapiens)
[TaxId: 9606]
[74932] (1)
1kef
first PDZ domain
chain a
[72369]
Syntrophin [50164]
Mouse (Mus musculus)
[TaxId: 10090]
[50165] (3)
1qav
chain a
[24777]
2pdz
chain a
[24778]
1z86
automatically matched to d1qava_
region a:79-164
[124690]
Syntenin 1 [89311]
Human (Homo sapiens)
[TaxId: 9606]
[89312] (26)
1r6j
second PDZ domain
complexed with cl
chain a
[97151]
1nte
second PDZ domain
complexed with o
chain a
[86163]
1obx
second PDZ domain; complexed with an interleukin 5 receptor alpha peptide, chain B
complexed with co, so4
chain a
[86783]
1w9e
automatically matched to d1obzb1
complexed with bez
region a:110-194
[120779]
1w9e
automatically matched to d1ntea_
complexed with bez
region a:197-273
[120780]
1w9e
automatically matched to d1obzb1
complexed with bez
region b:110-194
[120781]
1w9e
automatically matched to d1ntea_
complexed with bez
region b:197-273
[120782]
1obz
tandem of two PDZ domains; complexed with an interleukin 5 receptor alpha peptide, chain P
complexed with act
region a:111-194
[86786]
region a:195-273
[86787]
region b:108-194
[86788]
region b:195-272
[86789]
1w9q
automatically matched to d1obzb1
complexed with bez
region a:111-194
[120791]
1w9q
automatically matched to d1ntea_
complexed with bez
region a:197-273
[120792]
1w9q
automatically matched to d1obzb1
complexed with bez
region b:111-194
[120793]
1w9q
automatically matched to d1ntea_
complexed with bez
region b:197-273
[120794]
1oby
second PDZ domain; complexed with an interleukin 5 receptor alpha peptide, chains P and Q
complexed with so4
chain a
[86784]
chain b
[86785]
1v1t
automatically matched to d1obzb1
complexed with bez
region a:110-194
[119830]
1v1t
automatically matched to d1ntea_
complexed with bez
region a:197-273
[119831]
1v1t
automatically matched to d1obzb1
complexed with bez
region b:111-194
[119832]
1v1t
automatically matched to d1ntea_
complexed with bez
region b:197-272
[119833]
1n99
tandem of two PDZ domains
complexed with mse
region a:112-194
[85459]
region a:195-273
[85460]
region b:110-194
[85461]
region b:195-272
[85462]
1ybo
automatically matched to d1obzb1
region a:111-194
[122897]
1ybo
automatically matched to d1ntea_
region a:197-273
[122898]
1ybo
automatically matched to d1obzb1
region b:110-194
[122899]
1ybo
automatically matched to d1ntea_
region b:197-272
[122900]
1w9o
automatically matched to d1obzb1
complexed with bez
region a:110-194
[120787]
1w9o
automatically matched to d1ntea_
complexed with bez
region a:197-273
[120788]
1w9o
automatically matched to d1obzb1
complexed with bez
region b:110-194
[120789]
1w9o
automatically matched to d1ntea_
complexed with bez
region b:197-272
[120790]
Segment polarity protein dishevelled homolog Dvl-2 [89313]
African clawed frog (Xenopus laevis)
[TaxId: 8355]
[89314] (5)
2f0a
automatically matched to d1l6oa_
complexed with co, so4
region a:251-342
[132661]
2f0a
automatically matched to d1l6oa_
complexed with co, so4
region b:251-342
[132662]
2f0a
automatically matched to d1l6oa_
complexed with co, so4
region c:251-340
[132663]
2f0a
automatically matched to d1l6oa_
complexed with co, so4
region d:251-342
[132664]
1l6o
complexed with a peptide from Daper 1, chains D, E and F
complexed with mse
chain a
[84534]
chain b
[84535]
chain c
[84536]
Mouse (Mus musculus)
[TaxId: 10090]
[101715] (1)
1mc7
mutant
chain a
[91241]
Neuronal nitric oxide synthase, NNOS [50166]
Rat (Rattus norvegicus)
[TaxId: 10116]
[50167] (3)
1qau
chain a
[24779]
1qav
chain b
[24780]
1b8q
chain a
[24781]
Phosphatase hPTP1e [50168]
Human (Homo sapiens)
[TaxId: 9606]
[50169] (3)
1d5g
PDZ2 domain
chain a
[70080]
3pdz
PDZ2 domain
chain a
[24782]
1q7x
alternatively spliced PDZ2 domain
chain a
[96059]
Mouse (Mus musculus)
[TaxId: 10090]
[74930] (3)
1ozi
alternatively spliced PDZ2 domain
mutant
chain a
[93845]
1gm1
PDZ2 domain
chain a
[70271]
1vj6
automatically matched to d1gm1a_
region a:9-102
[120064]
Na+/H+ exchanger regulatory factor, NHERF [63754]
Human (Homo sapiens)
[TaxId: 9606]
[63755] (4)
1g9o
first PDZ domain
chain a
[60400]
1i92
first PDZ domain
complexed with cl
chain a
[61990]
1gq4
first PDZ domain
complexed with cl
chain a
[70340]
1gq5
first PDZ domain
complexed with cl
chain a
[76274]
Inad [63756]
Fruit fly (Drosophila melanogaster)
[TaxId: 7227]
[63757] (1)
1ihj
first PDZ domain; complexed with a Norpa C-terminal peptide
chain a
[62382]
chain b
[62383]
Glutamate receptor interacting protein [82083]
Rat (Rattus norvegicus)
[TaxId: 10116]
[82084] (3)
1m5z
seventh PDZ domain
chain a
[78676]
1p1e
first PDZ domain
chain a
[93898]
1p1d
first and second PDZ domains
region a:18-114
[93896]
region a:115-213
[93897]
Mouse (Mus musculus)
[TaxId: 10090]
[110177] (1)
SQ
Q925T6
461-570
1v5q
Structural genomics target
chain a
[108383]
Erbin [82085]
Human (Homo sapiens)
[TaxId: 9606]
[82086] (5)
2h3l
automatically matched to d1n7ta_
region a:1310-1412
[136046]
2h3l
automatically matched to d1n7ta_
region b:1314-1411
[136047]
1mfg
complexed with the carboxy-terminal tail of the erbb2 receptor
chain a
[79043]
1mfl
complexed with the carboxy-terminal tail of the erbb2 receptor
chain a
[79044]
1n7t
complexed with a phage-derived peptide
chain a
[80275]
GTPase-binding domain of the cell polarity protein par6 (Par-6B) [89315]
Mouse (Mus musculus)
[TaxId: 10090]
[89316] (1)
1nf3
complexed with gnp, mg; mutant
chain c
[85596]
chain d
[85597]
Fruit fly (Drosophila melanogaster)
[TaxId: 7227]
[101716] (3)
SQ
O97111
156-253; Cg5884-pa
1rzx
complexed with peptide, chain B
complexed with ace
chain a
[98236]
1x8s
complexed with a Pals1 peptide, chain B
chain a
[114967]
1ry4
chain a
[98085]
Glutamate receptor-interacting protein 1, GRIP1 [101717]
Rat (Rattus norvegicus)
[TaxId: 10116]
[101718] (2)
1n7e
sixth PDZ domain
chain a
[91691]
1n7f
sixth PDZ domain; complexed with liprin C-terminal peptide, chains C and D
chain a
[91692]
chain b
[91693]
Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) [101719]
Human (Homo sapiens)
[TaxId: 9606]
[101720] (5)
SQ
Q86UL8
412-522, 600-682, 774-865, 913-1015, 1141-1230
1ujv
structural genomics; second PDZ domain
chain a
[99470]
1ueq
structural genomics; first PDZ domain
chain a
[99271]
1uew
structural genomics; fourth PDZ domain
chain a
[99281]
1uep
structural genomics; third PDZ domain
chain a
[99270]
1wfv
Structural genomics target; 5th PDZ domain (of 6)
chain a
[114594]
KIAA1526 protein [101721]
Human (Homo sapiens)
[TaxId: 9606]
[101722] (3)
1ufx
structural genomics; third PDZ domain
chain a
[99359]
1uf1
structural genomics; second PDZ domain
chain a
[99288]
1uez
structural genomics; first PDZ domain
chain a
[99286]
Hypothetical protein KIAA1095 [101723]
Human (Homo sapiens)
[TaxId: 9606]
[101724] (2)
SQ
Q9UPQ7
246-339, 404-512
1uhp
structural genomics; Rsgi Ruh-005 domain
chain a
[99400]
1wh1
Structural genomics target; 4th PDZ domain
chain a
[114629]
Discs large 5 protein KIAA0583 [101725]
Human (Homo sapiens)
[TaxId: 9606]
[101726] (1)
1uit
structural genomics; Rsgi Ruh-006 domain
chain a
[99433]
Hypothetical protein KIAA0559 [101727]
Human (Homo sapiens)
[TaxId: 9606]
[101728] (1)
1ujd
structural genomics; Rsgi Ruh-003 domain
chain a
[99454]
Hypothetical protein KIAA1849 [101729]
Human (Homo sapiens)
[TaxId: 9606]
[101730] (1)
1um1
structural genomics; Rsgi Ruh-007 domain
chain a
[99578]
Scribble (KIAA0147) [101731]
Human (Homo sapiens)
[TaxId: 9606]
[101732] (3)
SQ
Q14160
680-951, 1096-1193 # structure of 1st PDZ domain is also known, 1XQ5
1wha
Structural genomics target; 2nd PDZ domain
chain a
[114638]
1uju
structural genomics; 4th PDZ domain
chain a
[99469]
1x5q
1st PDZ domain
region a:8-104
[121717]
Shank1, PDZ domain [101733]
SH3 and multiple ankyrin repeat domains protein 1
Rat (Rattus norvegicus)
[TaxId: 10116]
[101734] (2)
1q3o
complexed with br
chain a
[95700]
chain b
[95701]
1q3p
chain a
[95702]
chain b
[95703]
Zasp (Cypher, Oracle 1) [101735]
Human (Homo sapiens)
[TaxId: 9606]
[101736] (1)
1rgw
mutant
chain a
[97455]
Mouse (Mus musculus)
[TaxId: 10090]
[117173] (1)
SQ
Q9D130
1-83
1wjl
Structural genomics target; fragment
chain a
[114701]
Alpha-actinin-2 associated LIM protein [110178]
Mouse (Mus musculus)
[TaxId: 10090]
[110179] (1)
SQ
O70209
4-93
1v5l
Structural genomics target
chain a
[108378]
Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) [110180]
Human (Homo sapiens)
[TaxId: 9606]
[110181] (2)
SQ
Q9C0E4
238-341
1v62
Structural genomics target
chain a
[108390]
1x5r
4th PDZ domain
region a:8-106
[121718]
Harmonin [110182]
Mouse (Mus musculus)
[TaxId: 10090]
[110183] (1)
SQ
Q9ES64
741-850
1v6b
Structural genomics target
chain a
[108394]
Human (Homo sapiens)
[TaxId: 9606]
[141263] (1)
SQ
Q9Y6N9
201-301
1x5n
region a:8-108
[121714]
Rhophilin-2 [110184]
Mouse (Mus musculus)
[TaxId: 10090]
[110185] (1)
SQ
Q8BWR8
506-603
1vae
Structural genomics target
mutant
chain a
[108466]
PDZ-LIM protein mystique [110186]
Mouse (Mus musculus)
[TaxId: 10090]
[110187] (1)
SQ
Q8R1G6
3-83
1vb7
Structural genomics target
chain a
[108474]
Enigma homolog ENH [117174]
Mouse (Mus musculus)
[TaxId: 10090]
[117175] (1)
SQ
Q8CI51
5-94
1wf7
Structural genomics target
chain a
[114577]
DNA Regulating synaptic membrane exocytosis protein 2, RIMS2 [117176]
Human (Homo sapiens)
[TaxId: 9606]
[117177] (1)
SQ
Q9UQ26
637-754; the structure of the 1st C2 domain (807-934) is also known (
scop_sp 101565
)
1wfg
Structural genomics target
chain a
[114581]
Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) [117178]
Mouse (Mus musculus)
[TaxId: 10090]
[117179] (1)
SQ
Q5SV53
478-591
1wg6
Structural genomics target
chain a
[114603]
Regulator of G-protein signaling 3, RGS3 [117180]
Mouse (Mus musculus)
[TaxId: 10090]
[117181] (1)
SQ
Q9DC04
18-94
1whd
Structural genomics target
chain a
[114641]
Human (Homo sapiens)
[TaxId: 9606]
[141264] (2)
SQ
P49796
300-376
2f5y
complexed with so4
region a:19-95
[133015]
2f5y
automatically matched to 2F5Y A:19-95
complexed with so4
region b:19-95
[133016]
PDZ domain containing protein 11, Pdzk11 [117182]
Mouse (Mus musculus)
[TaxId: 10090]
[117183] (1)
SQ
Q9CZG9
37-127
1wi2
Structural genomics target
chain a
[114659]
hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) [117184]
Mouse (Mus musculus)
[TaxId: 10090]
[117185] (1)
SQ
Q9CR71
8-120
1wif
Structural genomics target
chain a
[114669]
Tight junction protein ZO-2, Tjp2 [141265]
Mouse (Mus musculus)
[TaxId: 10090]
[141266] (1)
SQ
Q9Z0U1
1-104
2csj
region a:8-111
[130771]
Multiple PDZ domain protein [141267]
Human (Homo sapiens)
[TaxId: 9606]
[141268] (4)
SQ
Q5VZ62
1138-1243! SQ
Q5VZ62
1955-2042
2fcf
PDZ 7
region a:1148-1243
[133267]
2fne
PDZ 13
region a:1955-2042
[133813]
2fne
automatically matched to 2FNE A:1955-2042
region b:1955-2042
[133814]
2fne
automatically matched to 2FNE A:1955-2042
region c:1955-2042
[133815]
Afadin [141269]
Human (Homo sapiens)
[TaxId: 9606]
[141270] (3)
SQ
P55196
985-1079! SQ
P55196
987-1077
1t2m
region a:2-93
[119133]
2exg
automatically matched to 1XZ9 A:6-101
complexed with stf
region a:6-101
[132526]
1xz9
region a:6-101
[122471]
Syntaxin binding protein 4 [141271]
Mouse (Mus musculus)
[TaxId: 10090]
[141272] (1)
SQ
Q9WV89
12-107
1wi4
region a:8-103
[120973]
Channel associated protein of synapse-110 [141273]
Discs large homolog 2, PSD-93
Human (Homo sapiens)
[TaxId: 9606]
[141274] (1)
SQ
Q15700
190-283
2byg
region a:190-283
[129480]
Maguk p55 subfamily member 5 [141275]
Mouse (Mus musculus)
[TaxId: 10090]
[141276] (1)
SQ
Q9JLB2
236-335
Structure of the second L27 domain is known (
scop_sp 101293
)
1va8
region a:8-107
[119903]
Neurabin-i [141277]
Human (Homo sapiens)
[TaxId: 9606]
[141278] (1)
SQ
Q9ULJ8
500-593
1wf8
region a:8-101
[120967]
Regulating synaptic membrane exocytosis protein 1, RIMS1 [141279]
Rat (Rattus norvegicus)
[TaxId: 10116]
[141280] (1)
SQ
Q9JIR4
597-705
1zub
region a:597-705
[125665]
Human (Homo sapiens)
[TaxId: 9606]
[141281] (1)
SQ
Q86UR5
585-694
2css
region a:8-115
[130780]
Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) [141282]
Human (Homo sapiens)
[TaxId: 9606]
[141283] (7)
SQ
Q02410
656-740! SQ
Q02410
657-743! SQ
Q02410
657-745! SQ
Q02410
743-822! SQ
Q02410
745-823! SQ
Q02410
746-839
structure of the PTB domain is also known (
scop_sp 50757
)
1y7n
2nd PDZ domain
region a:12-90
[122700]
1x45
1st PDZ domain
region a:8-92
[121679]
1u38
automatically matched to 1U37 A:19-105
region a:19-105
[119502]
1u37
1st PDZ domain
region a:19-105
[119501]
1u3b
region a:19-107
[119508]
1u3b
region a:108-201
[119509]
1u39
2nd PDZ domain
region a:79-158
[119503]
Presynaptic protein sap97 [141284]
PSD-95 homologue
Rat (Rattus norvegicus)
[TaxId: 10116]
[141285] (1)
SQ
Q62696
221-313
1zok
region a:221-313
[125451]
Tyrosine-protein phosphatase non-receptor type 4, PTPN4 [141286]
Human (Homo sapiens)
[TaxId: 9606]
[141287] (1)
SQ
P29074
507-612
2cs5
region a:8-113
[130747]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk