Structural Classification of Proteins
home mail help root up expand collapse

Family: YgdI/YgdR-like

Pfam 06004; DUF903, putative lipoprotein; both homohexameric and homoheptameric ring assemblies are observed in the crystals

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Sm-like fold [50181]
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. Superfamily: Sm-like ribonucleoproteins [50182]
    link to SUPERFAMILY database - Superfamily
  5. Family: YgdI/YgdR-like [159052]
    Pfam 06004; DUF903, putative lipoprotein; both homohexameric and homoheptameric ring assemblies are observed in the crystals

Protein Domains:

  1. Uncharacterized protein SO0963 [159053]
    1. Shewanella oneidensis [TaxId: 70863] [159054] (2)
      SQ Q8EI81 25-76
      1. 2rb6 picpic
        1. region a:25-76 [151844] picpiclink
      2. 2rb6 picpic
        automatically matched to 2RB6 A:25-76
        1. region b:25-76 [151845] picpiclink
  2. Uncharacterized protein YgdI [159055]
    1. Salmonella typhimurium [TaxId: 90371] [159056] (6)
      SQ Q7CPV8 23-75
      1. 2ra2 picpic
        1. region a:4-56 [151811] picpiclink
      2. 2ra2 picpic
        automatically matched to 2RA2 A:4-56
        1. region b:4-56 [151812] picpiclink
      3. 2ra2 picpic
        automatically matched to 2RA2 A:4-56
        1. region c:4-56 [151813] picpiclink
      4. 2ra2 picpic
        automatically matched to 2RA2 A:4-56
        1. region d:4-56 [151814] picpiclink
      5. 2ra2 picpic
        automatically matched to 2RA2 A:4-56
        1. region e:4-56 [151815] picpiclink
      6. 2ra2 picpic
        automatically matched to 2RA2 A:4-56
        1. region f:4-55 [151816] picpiclink
  3. Uncharacterized protein ECA1013 [159057]
    1. Erwinia carotovora [TaxId: 554] [159058] (7)
      SQ Q6D8G1 21-73
      1. 3bdu picpic
        1. region a:2-54 [155154] picpiclink
      2. 3bdu picpic
        automatically matched to 3BDU A:2-54
        1. region b:2-53 [155155] picpiclink
      3. 3bdu picpic
        automatically matched to 3BDU A:2-54
        1. region c:2-53 [155156] picpiclink
      4. 3bdu picpic
        automatically matched to 3BDU A:2-54
        1. region d:2-53 [155157] picpiclink
      5. 3bdu picpic
        automatically matched to 3BDU A:2-54
        1. region e:2-54 [155158] picpiclink
      6. 3bdu picpic
        automatically matched to 3BDU A:2-54
        1. region f:2-53 [155159] picpiclink
      7. 3bdu picpic
        automatically matched to 3BDU A:2-54
        1. region g:2-53 [155160] picpiclink
  4. Putative outer membrane lipoprotein STM1585 [159059]
    1. Salmonella typhimurium [TaxId: 90371] [159060] (3)
      SQ Q7CQI7 22-73
      1. 2rd1 picpic
        1. region a:22-73 [151915] picpiclink
      2. 2rd1 picpic
        automatically matched to 2RD1 A:22-73
        1. region b:22-73 [151916] picpiclink
      3. 2rd1 picpic
        automatically matched to 2RD1 A:22-73
        1. region c:22-73 [151917] picpiclink
  5. Uncharacterized protein PSPPH2109 [159061]
    1. Pseudomonas syringae [TaxId: 317] [159062] (1)
      SQ Q48JU9 23-74
      1. 2k57 picpic
        1. region a:2-53 [148272] picpiclink
  6. Hypothetical lipoprotein YgdR [159063]
    1. Escherichia coli [TaxId: 562] [159064] (1)
      SQ P65294 23-72
      1. 2jn0 picpic
        1. region a:4-53 [148141] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk