Structural Classification of Proteins
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Fold: SspB-like

core: barrel, open; n*=4, S*=8; meander; SH3-like topology; some similarity to the Sm-like fold

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: SspB-like [101737]
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology; some similarity to the Sm-like fold

Superfamilies:

  1. SspB-like [101738] (2)
    link to SUPERFAMILY database - Superfamily
    1. Stringent starvation protein B, SspB [101739] (2)
      1. Stringent starvation protein B, SspB [101740]
        a specificity-enhancing factor for the ClpXP proteolytic machine
        1. Escherichia coli [TaxId: 562] [101741] (6)
          1. 1yfn picpic
            automatically matched to d1ox9a_
            1. region a:4-111 [123080] picpiclink
          2. 1yfn picpic
            automatically matched to d1ox9a_
            1. region b:5-111 [123081] picpiclink
          3. 1yfn picpic
            automatically matched to d1ox9a_
            1. region c:5-111 [123082] picpiclink
          4. 1yfn picpic
            automatically matched to d1ox9a_
            1. region d:5-111 [123083] picpiclink
          5. 1ox8 picpic
            1. chain a [93671] picpiclink
            2. chain b [93672] picpiclink
          6. 1ox9 picpic
            complexed with a SsrA peptide; chains I, J, K, L, M, N, O and P
            1. chain a [93673] picpiclink
            2. chain b [93674] picpiclink
            3. chain c [93675] picpiclink
            4. chain d [93676] picpiclink
            5. chain e [93677] picpiclink
            6. chain f [93678] picpiclink
            7. chain g [93679] picpiclink
            8. chain h [93680] picpiclink
        2. Haemophilus influenzae [TaxId: 727] [101742] (7)
          SQ P45206 5-110
          1. 1ou8 picpic
            complexed with a SsrA peptide; chains C and D
            complexed with mg
            1. chain a [93543] picpiclink
            2. chain b [93544] picpiclink
          2. 1ou9 picpic
            complexed with ca
            1. chain a [93545] picpiclink
            2. chain b [93546] picpiclink
            3. chain c [93547] picpiclink
          3. 1twb picpic
            disulfide crosslinked to an SsrA degradation tag, chains C and D
            mutant
            1. chain a [112709] picpiclink
            2. chain b [112710] picpiclink
          4. 1zsz picpic
            automatically matched to d1oula_
            complexed with mg; mutant
            1. region a:5-110 [125622] picpiclink
          5. 1zsz picpic
            complexed with mg; mutant
            1. region c:5-113 [144760] picpiclink
          6. 1zsz picpic
            complexed with mg; mutant
            1. region b:5-110 [144759] picpiclink
          7. 1oul picpic
            1. chain a [93549] picpiclink
            2. chain b [93550] picpiclink
    2. AGR_C_3712p-like [159075] (1)
      Pfam 07031; DUF1321
      1. Uncharacterized protein AGR_C_3712p [159076]
        1. Agrobacterium tumefaciens [TaxId: 358] [159077] (2)
          SQ Q8U561 3-119
          1. 2nys picpic
            mutant
            1. region a:3-119 [148518] picpiclink
          2. 2nys picpic
            automatically matched to 2NYS A:3-119
            mutant
            1. region b:4-118 [148519] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk