Structural Classification of Proteins
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Family: RNB domain-like

Pfam 00773; RNase II catalytic domain; decorated OB-fold domain with extra C-terminal structures forming the active site

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: OB-fold [50198]
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. Superfamily: Nucleic acid-binding proteins [50249]
    link to SUPERFAMILY database - Superfamily
  5. Family: RNB domain-like [159112]
    Pfam 00773; RNase II catalytic domain; decorated OB-fold domain with extra C-terminal structures forming the active site

Protein Domains:

  1. Exosome complex exonuclease RRP44 [159113]
    1. Saccharomyces cerevisiae [TaxId: 4932] [159114] (1)
      SQ Q08162 495-910
      1. 2vnu picpicxrefxrefxref
        complexed with 1pe, mg, na; mutant
        1. region d:495-910 [153347] picpiclink
  2. Ribonuclease II family protein DR0020 [159115]
    Includes extra N-terminal all-alpha subdomain
    1. Deinococcus radiodurans [TaxId: 1299] [159116] (4)
      SQ Q9RYD0 3-403
      1. 2r7d picpicxrefxrefxref
        complexed with mg
        1. region a:3-403 [151630] picpiclink
      2. 2r7d picpicxrefxrefxref
        automatically matched to 2R7D A:3-403
        complexed with mg
        1. region b:3-403 [151632] picpiclink
      3. 2r7d picpicxrefxrefxref
        automatically matched to 2R7D A:3-403
        complexed with mg
        1. region c:3-403 [151634] picpiclink
      4. 2r7f picpicxref
        automatically matched to 2R7D A:3-403
        1. region a:3-403 [151636] picpiclink
  3. Exoribonuclease 2, RNB [159117]
    RNase II
    1. Escherichia coli [TaxId: 562] [159118] (6)
      SQ P30850 173-557
      1. 2ix0 picpicxrefxrefxref
        complexed with c5p, ca, mg
        1. region a:173-557 [147821] picpiclink
      2. 2id0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn
        1. region a:173-557 [147609] picpiclink
      3. 2id0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2ID0 A:173-557
        complexed with mn
        1. region b:173-557 [147613] picpiclink
      4. 2id0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2ID0 A:173-557
        complexed with mn
        1. region c:173-557 [147617] picpiclink
      5. 2id0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2ID0 A:173-557
        complexed with mn
        1. region d:173-557 [147621] picpiclink
      6. 2ix1 picpicxrefxrefxref
        complexed with mg; mutant
        1. region a:173-557 [147825] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk