Structural Classification of Proteins

Superfamily: Phage tail proteins

: uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Phage tail proteins [69278]
core: barrel; n=6, S=10; greek-key; topologically similar to the FMN-binding split barrel
Superfamily: Phage tail proteins [69279]
uperfamily

Families:

Baseplate protein-like [69280] (5)
duplication: consists of two similar barrel domains that differ by the first strand directions; the barrels are differently decorated by alpha+beta insertions
1. Baseplate structural protein gp27 [69281]
  1. Bacteriophage T4 [TaxId: 10665] [69282] (3)
    1. 1k28
      complexed with k, po4
      1. region d:4-200 [68052]
      2. region d:201-376 [68053]
    2. 1wth
      automatically matched to d1k28d1
      complexed with k, po4; mutant
      1. region d:4-200 [121268]
    3. 1wth
      automatically matched to d1k28d2
      complexed with k, po4; mutant
      1. region d:201-376 [121269]
2. Hypothetical protein c3393 [159177]
  probable phage-related protein; similar to fusion of the T4 phage gp27 and (a part of) gp5
  1. Escherichia coli o6 [TaxId: 217992] [159178] (2)
    SQ Q8FED2 15-201! SQ Q8FED2 202-377
    1. 2p5z
      1. region x:15-201 [149264]
    2. 2p5z
      1. region x:202-377 [149265]
3. Baseplate protein gpP [159179]
  43 kda tail protein; Pfam 06893
  1. Neisseria meningitidis [TaxId: 487] [159180] (4)
    SQ Q9JZC8 179-347! SQ Q9JZC8 6-178
    unidentified prophage?
    1. 3d37
      complexed with cl
      1. region a:6-178 [157269]
    2. 3d37
      complexed with cl
      1. region a:179-347 [157270]
    3. 3d37
      automatically matched to 3D37 A:6-178
      complexed with cl
      1. region b:6-178 [157271]
    4. 3d37
      automatically matched to 3D37 A:179-347
      complexed with cl
      1. region b:179-347 [157272]
  2. Bacteriophage mu [TaxId: 10677] [159181] (2)
    SQ P08558 177-346! SQ P08558 3-176
    1. 1wru
      1. region a:177-346 [145831]
    2. 1wru
      1. region a:3-176 [145832]
  3. Shewanella oneidensis [TaxId: 70863] [159182] (12)
    SQ Q8EDP4 181-348! SQ Q8EDP4 2-180
    Prophage MuSo2
    1. 3cdd
      1. region a:181-348 [156500]
    2. 3cdd
      1. region a:2-180 [156501]
    3. 3cdd
      automatically matched to 3CDD A:181-348
      1. region b:181-345 [156502]
    4. 3cdd
      automatically matched to 3CDD A:2-180
      1. region b:3-180 [156503]
    5. 3cdd
      automatically matched to 3CDD A:181-348
      1. region c:181-343 [156504]
    6. 3cdd
      automatically matched to 3CDD A:2-180
      1. region c:3-180 [156505]
    7. 3cdd
      automatically matched to 3CDD A:181-348
      1. region d:181-343 [156506]
    8. 3cdd
      automatically matched to 3CDD A:2-180
      1. region d:2-180 [156507]
    9. 3cdd
      automatically matched to 3CDD A:181-348
      1. region e:181-343 [156508]
    10. 3cdd
      automatically matched to 3CDD A:2-180
      1. region e:2-180 [156509]
    11. 3cdd
      automatically matched to 3CDD A:181-348
      1. region f:181-345 [156510]
    12. 3cdd
      automatically matched to 3CDD A:2-180
      1. region f:3-180 [156511]
gpFII-like [74966] (2)
similar to the N-terminal barrel of T4 gp27
1. Tail attachment protein gpF3 [74967]
  1. Bacteriophage lambda [TaxId: 10710] [74968] (1)
    1. 1k0h
      1. chain a [71975]
2. Gifsy-2 prophage protein STM1035 [159183]
  ATP-binding sugar transporter-like protein
  1. Salmonella typhimurium [TaxId: 90371] [159184] (1)
    SQ Q8ZQ92 1-93
    1. 2pp6
      1. region a:1-93 [149728]
XkdM-like [159185] (1)
Pfam 09393; DUF2001
1. Phage-like element PBSX protein XkdM [159186]
  1. Bacillus subtilis [TaxId: 1423] [159187] (2)
    SQ P54332 5-143
    1. 2guj
      1. region a:5-143 [147180]
    2. 2guj
      automatically matched to 2GUJ A:5-143
      1. region b:5-143 [147181]