Superfamily: Phage tail proteins

uperfamily

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: Phage tail proteins [69278]
   core: barrel; n=6, S=10; greek-key; topologically similar to the FMN-binding split barrel
4. Superfamily: Phage tail proteins [69279]
   uperfamily

Families:

1. Baseplate protein-like [69280] (5)
   duplication: consists of two similar barrel domains that differ by the first strand directions; the barrels are differently decorated by alpha+beta insertions
   1. Baseplate structural protein gp27 [69281]
      1. Bacteriophage T4 [TaxId: 10665] [69282] (3)
   2. Hypothetical protein c3393 [159177]
      probable phage-related protein; similar to fusion of the T4 phage gp27 and (a part of) gp5
      1. Escherichia coli o6 [TaxId: 217992] [159178] (2)
         SQ Q8FED2 15-201! SQ Q8FED2 202-377
   3. Baseplate protein gpP [159179]
      43 kda tail protein; Pfam 06893
      1. Neisseria meningitidis [TaxId: 487] [159180] (4)
         SQ Q9JZC8 179-347! SQ Q9JZC8 6-178
         unidentified prophage?
      2. Bacteriophage mu [TaxId: 10677] [159181] (2)
         SQ P08558 177-346! SQ P08558 3-176
      3. Shewanella oneidensis [TaxId: 70863] [159182] (12)
         SQ Q8EDP4 181-348! SQ Q8EDP4 2-180
         Prophage MuSo2
2. gpFII-like [74966] (2)
   similar to the N-terminal barrel of T4 gp27
   1. Tail attachment protein gpF3 [74967]
      1. Bacteriophage lambda [TaxId: 10710] [74968] (1)
   2. Gifsy-2 prophage protein STM1035 [159183]
      ATP-binding sugar transporter-like protein
      1. Salmonella typhimurium [TaxId: 90371] [159184] (1)
         SQ Q8ZQ92 1-93
3. XkdM-like [159185] (1)
   Pfam 09393; DUF2001
   1. Phage-like element PBSX protein XkdM [159186]
      1. Bacillus subtilis [TaxId: 1423] [159187] (2)
         SQ P54332 5-143

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk