Structural Classification of Proteins

Fold: Domain of alpha and beta subunits of F1 ATP synthase-like

: barrel, closed; n=6, S=8; greek-key

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Domain of alpha and beta subunits of F1 ATP synthase-like [50614]
barrel, closed; n=6, S=8; greek-key

Superfamilies:

N-terminal domain of alpha and beta subunits of F1 ATP synthase [50615] (1)
uperfamily
1. N-terminal domain of alpha and beta subunits of F1 ATP synthase [50616] (8)
  6 domains form a ring structure which contains a barrel, closed; n=24, S=24(?)
  1. F1 ATP synthase alpha subunit, domain 1 [88672]
    1. Cow (Bos taurus) [TaxId: 9913] [88673] (18)
      SQ P19483
    2. Rat (Rattus norvegicus) [TaxId: 10116] [88674] (2)
    3. Bacillus sp., strain ps3 [TaxId: 1409] [88675] (1)
    4. Spinach (Spinacia oleracea), chloroplast [TaxId: 3562] [88676] (2)
  2. F1 ATP synthase beta subunit, domain 1 [88677]
    1. Cow (Bos taurus) [TaxId: 9913] [88678] (12)
      SQ P00829
    2. Rat (Rattus norvegicus) [TaxId: 10116] [88679] (8)
    3. Bacillus sp., strain ps3 [TaxId: 1409] [88680] (1)
    4. Spinach (Spinacia oleracea), chloroplast [TaxId: 3562] [88681] (2)
Alanine racemase C-terminal domain-like [50621] (2)
the barrel is decorated with additional structures
uperfamily
1. Alanine racemase [88682] (3)
  1. Alanine racemase [50623]
    1. Bacillus stearothermophilus [TaxId: 1422] [50624] (8)
    2. Pseudomonas aeruginosa [TaxId: 287] [110243] (1)
      SQ Q9HTQ2
    3. Streptomyces lavendulae [TaxId: 1914] [110244] (3)
      SQ Q65YW7
2. Eukaryotic ODC-like [88683] (6)
  barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel
  1. Eukaryotic ornithine decarboxylase (ODC) [50625]
    1. Human (Homo sapiens) [TaxId: 9606] [50626] (1)
    2. Mouse (Mus musculus) [TaxId: 10090] [50627] (1)
    3. Trypanosoma brucei [TaxId: 5691] [50628] (5)
      SQ P07805
  2. Diaminopimelate decarboxylase LysA [89350]
    1. Mycobacterium tuberculosis [TaxId: 1773] [89351] (2)
    2. Escherichia coli [TaxId: 562] [101820] (2)
    3. Archaeon Methanococcus jannaschii [TaxId: 2190] [110245] (2)
      SQ Q58497
Aminopeptidase/glucanase lid domain [101821] (1)
uperfamily
1. Aminopeptidase/glucanase lid domain [101822] (7)
  1. Hypothetical protein YsdC [101823]
    1. Bacillus subtilis [TaxId: 1423] [101824] (1)
  2. Putative endoglucanase TM1048 [101825]
    1. Thermotoga maritima [TaxId: 2336] [101826] (1)
  3. Frv operon protein FrvX [117239]
    1. Pyrococcus horikoshii [TaxId: 53953] [117240] (3)
      SQ O59196 # PH1527
  4. Probable aminopeptidase ApeA [117241]
    1. Borrelia burgdorferi [TaxId: 139] [117242] (1)
      SQ Q45055; BB0366
  5. Deblocking aminopeptidase YhfE [141387]
    1. Bacillus cereus [TaxId: 1396] [141388] (16)
      SQ Q81HB5 74-186
      BC0901
  6. Aminopeptidase YpdE [141389]
    1. Shigella flexneri [TaxId: 623] [141390] (6)
      SQ Q83K87 67-147
      hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)
  7. Endoglucanase TM1049 [141391]
    1. Thermotoga maritima [TaxId: 2336] [141392] (1)
      SQ Q9X0D9 65-148