Structural Classification of Proteins
Family: Pepsin-like
duplication: consists of two similar barrel domains
N-terminal: barrel, partly opened; n*=6, S*=10
Lineage:
Root:
scop
Class:
All beta proteins
[48724]
Fold:
Acid proteases
[50629]
barrel, closed; n=6, S=10, complex topology
Superfamily:
Acid proteases
[50630]
uperfamily
Family:
Pepsin-like
[50646]
duplication: consists of two similar barrel domains
N-terminal: barrel, partly opened; n*=6, S*=10
Protein Domains:
Endothiapepsin [50647]
Chestnut blight fungus (Endothia parasitica)
[TaxId: 5116]
[50648] (36)
1oew
complexed with gol, ser, so4, sui, thr
chain a
[86924]
1gvu
complexed with so4, sta, sui
chain a
[70619]
1gvt
complexed with cym, mor, nor, so4, sui
chain a
[70618]
1gvw
complexed with boc, dci, pta, so4, sui
chain a
[70621]
1gvx
complexed with frf, so4, sui
chain a
[70622]
1gvv
complexed with so4, sta, sui, trj
chain a
[70620]
1oex
complexed with boc, gol, lov, so4, sui
chain a
[86925]
1od1
complexed with chf, dph, emr, so4, tsm
chain a
[86820]
2v00
automatically matched to d1e5oe_
complexed with act, gol, v15
region a:1-330
[152359]
2er7
complexed with boc, lov, so4
chain e
[26779]
1epn
complexed with ch3, mor, nor, so4
chain e
[26780]
1epm
complexed with psa, so4
chain e
[26781]
3er5
complexed with sta
chain e
[26782]
5er2
complexed with ahs, boc
chain e
[26783]
1epq
complexed with gcl, scc, so4, sot
chain e
[26787]
1ent
complexed with boc, dci, pst, so4
chain e
[26786]
4er1
complexed with bna, cal, dci
chain e
[26785]
1eed
complexed with boc, chs, fog
chain p
[26788]
1epp
complexed with mas, mba, mtf, so4, sta
chain e
[26784]
1e82
complexed with hfa, mrm, pch
chain e
[26799]
1er8
chain e
[26789]
4er2
complexed with iva, so4, sta
chain e
[26792]
1e80
complexed with bal, chs, mrm, nsp
chain e
[26802]
1e5o
complexed with hph
chain e
[26798]
3er3
complexed with boc, cal
chain e
[26791]
1epo
complexed with chf, mor, nme
chain e
[26790]
1e81
complexed with cpy, hfa, mrm
chain e
[26803]
1epl
complexed with psa
chain e
[26794]
4ape
chain a
[26793]
2er6
chain e
[26795]
2er9
complexed with boc, sta
chain e
[26797]
5er1
complexed with ch2, lol, ome
chain e
[26796]
1epr
complexed with chf, dph, emr, tsm
chain e
[26800]
1gkt
neutron laue diffraction structure
complexed with boc, lov, sui
chain a
[65256]
4er4
chain e
[26801]
2er0
complexed with chs, iva, nh2
chain e
[26804]
Acid protease [50649]
Fungus (Penicillium janthinellum), penicillopepsin
[TaxId: 5079]
[50650] (14)
1bxo
complexed with gll, man, pp7, so4
chain a
[26805]
2wea
complexed with man, pp6, so4
chain a
[26806]
1bxq
complexed with act, gll, man, pp8, so4
chain a
[26807]
2wec
complexed with man, pp5, so4
chain a
[26808]
2wed
complexed with man, pp6, so4
chain a
[26810]
2web
complexed with man, pp4, so4
chain a
[26809]
1ppm
complexed with cbz, man, oph, ple, so4, xys
chain e
[26811]
1ppl
complexed with iva, man, oph, ple, so4, xys
chain e
[26812]
3app
chain a
[26815]
1apu
complexed with iva, man, oet, sta
chain e
[26813]
1apt
complexed with iva, lta, man
chain e
[26818]
1apw
complexed with dfi, dmf, iva, man, nme, so4, xys
chain e
[26817]
1ppk
complexed with dmf, iva, man, oet, pta, so4, xys
chain e
[26816]
1apv
complexed with dfo, dmf, iva, man, nme, so4, xys
chain e
[26814]
Fungus (Aspergillus phoenicis), aspergillopepsin
[TaxId: 5063]
[63794] (1)
1ibq
complexed with man, zn
chain a
[62229]
chain b
[62230]
Fungus (Aspergillus oryzae)
[TaxId: 5062]
[89352] (2)
1ize
complexed with ihn, man
chain a
[83840]
1izd
complexed with man
chain a
[83839]
Bread mold (Rhizopus chinensis)
[TaxId: 4843]
[50651] (8)
SQ
P06026
69-393
2apr
complexed with ca
chain a
[26819]
3apr
complexed with frd
chain e
[26820]
1uh9
chain a
[107844]
1uh7
chain a
[107842]
5apr
complexed with ca, ibu, sea, sta
chain e
[26821]
1uh8
chain a
[107843]
6apr
complexed with iva, sta
chain e
[26822]
4apr
complexed with iva, nh2, sta
chain e
[26823]
Rhizomucor miehei
[TaxId: 4839]
[50652] (2)
2asi
complexed with man, nag
chain a
[26824]
2rmp
complexed with iva, man, nag, sta
chain a
[26825]
Yeast (Candida albicans)
[TaxId: 5476]
[50653] (2)
1eag
complexed with cha, lyt, lyw, ods, pss, vas
chain a
[26826]
1zap
complexed with a70, zn
chain a
[26827]
Yeast (Candida tropicalis)
[TaxId: 5482]
[63795] (1)
1j71
complexed with eoh
chain a
[62669]
Baker's yeast (Saccharomyces cerevisiae), proteinase A
[TaxId: 4932]
[50654] (11)
synonym: saccharopepsin
1dpj
complexed with man, nag, so4
chain a
[26828]
1g0v
complexed with man, nag; mutant
chain a
[60189]
1dp5
complexed with man, nag; mutant
chain a
[26829]
1fq5
complexed with glu, leu, man, nag, npd, npy, sta, trj
chain a
[26830]
2jxr
complexed with chf, man, mor, nag, nme; mutant
chain a
[26831]
1fmx
complexed with man, nag
chain a
[70141]
chain b
[70142]
1fq4
complexed with emr, man, nag, pce, trm
chain a
[26832]
1fmu
complexed with man, nag
chain a
[70140]
1fq6
complexed with gcl, man, nag, phe, sot
chain a
[26833]
1fq8
complexed with cfs, man, mor, nag, nme, phe
chain a
[26834]
1fq7
complexed with boc, cal, his, man, nag, nme, phe
chain a
[26835]
Irpex lacteus (Polyporus tulipiferae), Polyporopepsin
[TaxId: 5319]
[110246] (1)
SQ
P17576
1-329
1wkr
complexed with iva, so4, sta
chain a
[109395]
Plant acid proteinase, phytepsin [50655]
Cynara cardunculus
[TaxId: 4265]
[50656] (1)
1b5f
complexed with fuc, man, nag
chain a,b
[26836]
chain c,d
[26837]
Barley (Hordeum vulgare)
[TaxId: 4513]
[50657] (1)
1qdm
zymogen; contains propeptide at the N-terminus and swaposin domain (residues 1S-104S) inserted in between residues 247 and 248
region a:2-247,a:248-338
[26838]
region b:2-247,b:248-338
[26839]
region c:3-247,c:248-338
[26840]
Pepsin(ogen) [50658]
Pig (Sus scrofa)
[TaxId: 9823]
[50659] (8)
3psg
chain a
[26841]
2psg
complexed with po3
chain a
[26842]
4pep
complexed with pho
chain a
[26843]
3pep
complexed with eoh
chain a
[26844]
1f34
complexed with mpd
chain a
[26848]
1psa
complexed with eto, xao
chain a
[26846]
chain b
[26847]
5pep
chain a
[26845]
1yx9
automatically matched to d1f34a_
complexed with dms
region a:1-327
[124174]
Human (Homo sapiens), isoform 3A
[TaxId: 9606]
[50660] (4)
1pso
complexed with iva, sta
chain e
[26849]
1qrp
complexed with ch3, hfa, iva, ple
chain e
[26850]
1psn
chain a
[26851]
1flh
chain a
[65031]
Human (Homo sapiens), progastricsin (pepsinogen C)
[TaxId: 9606]
[50661] (2)
1htr
chain p,b
[26852]
1avf
activation intermediate 2
complexed with na
chain p,a
[26853]
chain q,j
[26854]
Atlantic cod (Gadus morhua)
[TaxId: 8049]
[50662] (1)
1am5
chain a
[26855]
Pepsin [50663]
Mucor pusillus
[TaxId: 4840]
[50664] (1)
1mpp
complexed with so4
chain a
[26856]
Cathepsin D [50665]
Human (Homo sapiens)
[TaxId: 9606]
[50666] (3)
1lya
complexed with man, nag
chain a,b
[26859]
chain c,d
[26860]
1lyb
complexed with iva, man, nag, sta
chain a,b
[26857]
chain c,d
[26858]
1lyw
complexed with epe
chain a,b
[26861]
chain c,d
[26862]
chain e,f
[26863]
chain g,h
[26864]
Chymosin (synonym: renin) [50667]
Cow (Bos taurus)
[TaxId: 9913]
[50668] (4)
3cms
mutant
chain a
[26865]
4cms
chain a
[26866]
1cms
chain a
[26867]
1czi
complexed with nor
chain e
[26868]
Human (Homo sapiens)
[TaxId: 9606]
[50669] (7)
1hrn
complexed with cha, cpp, ip3, nag, ppp
chain a
[26869]
chain b
[26870]
1rne
complexed with c60, nag
chain a
[26871]
1bil
complexed with cha, dmf, hii, ip3, phc
chain a
[26872]
chain b
[26873]
2ren
complexed with nag
chain a
[26874]
1bim
complexed with cha, dmf, hii, ip4, phc
chain a
[26875]
chain b
[26876]
1bbs
chain a
[26877]
1bbs
duplicate of 1BBS
chain b
[118422]
Mouse (Mus musculus)
[TaxId: 10090]
[50670] (4)
1smr
complexed with lpl, piv
chain a
[26878]
1smr
duplicate of 1SMR A
complexed with lpl, piv
chain c
[118627]
1smr
duplicate of 1SMR A
complexed with lpl, piv
chain e
[118628]
1smr
duplicate of 1SMR A
complexed with lpl, piv
chain g
[118629]
beta-secretase (memapsin) [50671]
Human (Homo sapiens)
[TaxId: 9606]
[50672] (90)
SQ
P56817
58-446 ! SQ
P56817
60-447
2qp8
automatically matched to d1fkna_
complexed with sc7, tar
region a:60-446
[151197]
2qp8
automatically matched to d1fkna_
complexed with sc7, tar
region b:60-446
[151198]
2qmd
automatically matched to d1fkna_
complexed with cs7, tar
region a:60-446
[150878]
2qmd
automatically matched to d1fkna_
complexed with cs7, tar
region b:60-446
[150879]
3cib
automatically matched to d1fkna_
complexed with 314, tar
region a:60-446
[156664]
3cib
automatically matched to d1fkna_
complexed with 314, tar
region b:60-446
[156665]
3cic
automatically matched to d1fkna_
complexed with 316, tar
region a:60-446
[156666]
3cic
automatically matched to d1fkna_
complexed with 316, tar
region b:60-446
[156667]
3cid
automatically matched to d1fkna_
complexed with 318, tar
region a:60-446
[156668]
3cid
automatically matched to d1fkna_
complexed with 318, tar
region b:60-446
[156669]
2iqg
automatically matched to d1fkna_
complexed with f2i
region a:61p-385
[137588]
2qmf
automatically matched to d1fkna_
complexed with cs9, tar
region a:60-446
[150880]
2qmf
automatically matched to d1fkna_
complexed with cs9, tar
region b:60-446
[150881]
2qmg
automatically matched to d1fkna_
complexed with sc6, tar
region a:60-446
[150882]
2qmg
automatically matched to d1fkna_
complexed with sc6, tar
region b:60-446
[150883]
1tqf
complexed with 32p; mutant
chain a
[112613]
2g94
automatically matched to d1fkna_
complexed with zpq
region a:45p-385
[134790]
2g94
automatically matched to d1fkna_
complexed with zpq
region b:45p-385
[134791]
2g94
automatically matched to d1fkna_
complexed with zpq
region c:45p-385
[134792]
2g94
automatically matched to d1fkna_
complexed with zpq
region d:45p-385
[134793]
2qk5
automatically matched to d1fkna_
complexed with cs5
region a:60-446
[150837]
2qk5
automatically matched to d1fkna_
complexed with cs5
region b:60-446
[150838]
1fkn
complexed with alq, lol
chain a
[26879]
chain b
[26880]
1xn2
automatically matched to d1fkna_
complexed with alq
region a:45p-385
[122178]
1xn2
automatically matched to d1fkna_
complexed with alq
region b:45p-385
[122179]
1xn2
automatically matched to d1fkna_
complexed with alq
region c:45p-385
[122180]
1xn2
automatically matched to d1fkna_
complexed with alq
region d:45p-385
[122181]
1sgz
chain a
[98872]
chain b
[98873]
chain c
[98874]
chain d
[98875]
1w50
complexed with iod; mutant
chain a
[109173]
1xn3
automatically matched to d1fkna_
complexed with sta
region a:45p-385
[122182]
1xn3
automatically matched to d1fkna_
complexed with sta
region b:45p-385
[122183]
1xn3
automatically matched to d1fkna_
complexed with sta
region c:45p-385
[122184]
1xn3
automatically matched to d1fkna_
complexed with sta
region d:45p-385
[122185]
1ym2
automatically matched to d1fkna_
complexed with aua
region a:-2-385
[123679]
1ym2
automatically matched to d1fkna_
complexed with aua
region b:-2-385
[123680]
1ym2
automatically matched to d1fkna_
complexed with aua
region c:-2-385
[123681]
2f3e
automatically matched to d1fkna_
complexed with axq
region a:46p-385
[132864]
2f3e
automatically matched to d1fkna_
complexed with axq
region b:46p-385
[132865]
2f3e
automatically matched to d1fkna_
complexed with axq
region c:46p-385
[132866]
2zhv
automatically matched to d1fkna_
region a:-1-385
[154473]
2f3f
automatically matched to d1fkna_
complexed with axf
region a:46p-385
[132867]
2f3f
automatically matched to d1fkna_
complexed with axf
region b:46p-385
[132868]
2f3f
automatically matched to d1fkna_
complexed with axf
region c:46p-385
[132869]
2ohr
automatically matched to d1fkna_
complexed with 8ip, dms, gol, iod; mutant
region a:-1-385
[139076]
1m4h
complexed with alq, lol
chain a
[74455]
chain b
[74456]
2hm1
automatically matched to d1fkna_
complexed with liq
region a:61p-385
[136571]
2zht
automatically matched to d1fkna_
region a:-1-385
[154471]
2zhr
automatically matched to d1fkna_
complexed with alq, lol
region a:-1-385
[154468]
2zhr
automatically matched to d1fkna_
complexed with alq, lol
region b:-1-385
[154469]
2ohq
automatically matched to d1fkna_
complexed with 7ip, dms, gol, iod; mutant
region a:-1-385
[139075]
2zhu
automatically matched to d1fkna_
region a:-1-385
[154472]
2qu3
automatically matched to d1fkna_
complexed with 462
region a:61-445
[151364]
2of0
automatically matched to d1fkna_
complexed with cmz, dms, iod; mutant
region a:-1-385
[139041]
2ohk
automatically matched to d1fkna_
complexed with 1sq, dms, iod; mutant
region a:-1-385
[139070]
2ohn
automatically matched to d1fkna_
complexed with 4fp, dms, iod; mutant
region a:-1-385
[139073]
2ohu
automatically matched to d1fkna_
complexed with dms, iod, ip7; mutant
region a:-1-385
[139079]
2ohs
automatically matched to d1fkna_
complexed with 9ip, dms, iod; mutant
region a:-1-385
[139077]
2va7
automatically matched to d1fkna_
complexed with c27, iod; mutant
region a:-1-385
[152823]
2ohp
automatically matched to d1fkna_
complexed with 6ip, dms, iod; mutant
region a:-1-385
[139074]
2oht
automatically matched to d1fkna_
complexed with dms, iod, ip6; mutant
region a:-1-385
[139078]
2p83
automatically matched to d1fkna_
complexed with mr0, po4
region a:61p-385
[139519]
2p83
automatically matched to d1fkna_
complexed with mr0, po4
region b:61p-385
[139520]
2p83
automatically matched to d1fkna_
complexed with mr0, po4
region c:61p-385
[139521]
2hiz
automatically matched to d1fkna_
complexed with lij, po4
region a:61p-385
[136533]
2hiz
automatically matched to d1fkna_
complexed with lij, po4
region b:61p-385
[136534]
2hiz
automatically matched to d1fkna_
complexed with lij, po4
region c:61p-385
[136535]
2p4j
automatically matched to d1fkna_
complexed with 23i
region a:47p-385
[149210]
2p4j
automatically matched to d1fkna_
complexed with 23i
region b:47p-385
[149211]
2p4j
automatically matched to d1fkna_
complexed with 23i
region c:47p-385
[149212]
2p4j
automatically matched to d1fkna_
complexed with 23i
region d:47p-385
[149213]
2zhs
automatically matched to d1fkna_
region a:-1-385
[154470]
1ym4
automatically matched to d1fkna_
complexed with amk
region a:-3-385
[123682]
1ym4
automatically matched to d1fkna_
complexed with amk
region b:-2-385
[123683]
1ym4
automatically matched to d1fkna_
complexed with amk
region c:-3-385
[123684]
3ckp
automatically matched to d1fkna_
complexed with 012, cl; mutant
region a:-2-385
[156740]
3ckp
automatically matched to d1fkna_
complexed with 012, cl; mutant
region b:-2-385
[156741]
3ckp
automatically matched to d1fkna_
complexed with 012, cl; mutant
region c:-2-385
[156742]
2ohl
automatically matched to d1fkna_
complexed with 2aq, dms, iod; mutant
region a:-1-385
[139071]
2va6
automatically matched to d1fkna_
complexed with h24, iod; mutant
region a:-1-385
[152822]
2fdp
automatically matched to d1fkna_
complexed with frp
region a:46p-385
[133316]
2fdp
automatically matched to d1fkna_
complexed with frp
region b:46p-385
[133317]
2fdp
automatically matched to d1fkna_
complexed with frp
region c:46p-385
[133318]
2ohm
automatically matched to d1fkna_
complexed with 8ap, dms, iod; mutant
region a:-1-385
[139072]
2qu2
automatically matched to d1fkna_
complexed with 251
region a:61-445
[151363]
1w51
complexed with iod, l01; mutant
chain a
[109174]
2va5
automatically matched to d1fkna_
complexed with c8c, iod; mutant
region a:-1-385
[152821]
1xs7
complexed with mmi
chain d
[115919]
3ckr
automatically matched to d1fkna_
complexed with 009; mutant
region a:-2-385
[156743]
3ckr
automatically matched to d1fkna_
complexed with 009; mutant
region b:-2-385
[156744]
3ckr
automatically matched to d1fkna_
complexed with 009; mutant
region c:-2-385
[156745]
Plasmepsin (a hemoglobin-degrading enzyme) [50673]
Plasmodium falciparum, plasmepsin II
[TaxId: 5833]
[50674] (24)
2bju
automatically matched to d1lf3a_
complexed with ih4
region a:1-329
[128633]
2igx
automatically matched to d1lf3a_
complexed with a1t
region a:1-329
[137404]
1pfz
complexed with gol; mutant
chain a
[26881]
chain b
[26882]
chain c
[26883]
chain d
[26884]
1xdh
automatically matched to d1lf3a_
complexed with ihn
region a:1-329
[121870]
1xdh
automatically matched to d1lf3a_
complexed with ihn
region b:1-329
[121871]
1lf2
complexed with r37
chain a
[77914]
1lf4
chain a
[77916]
1lee
complexed with r36
chain a
[77908]
1w6h
automatically matched to d1lf3a_
complexed with tit
region a:1-329
[120663]
1w6h
automatically matched to d1lf3a_
complexed with tit
region b:1-329
[120664]
1xe5
automatically matched to d1lf3a_
complexed with 5fe
region a:1-329
[121906]
1xe5
automatically matched to d1lf3a_
complexed with 5fe
region b:1-329
[121907]
1m43
complexed with ihn; mutant
chain a
[74438]
chain b
[74439]
1lf3
complexed with eh5
chain a
[77915]
2igy
automatically matched to d1lf3a_
complexed with a2t
region a:1-329
[137405]
2igy
automatically matched to d1lf3a_
complexed with a2t
region b:1-329
[137406]
1w6i
automatically matched to d1lf3a_
complexed with ihn
region a:1-329
[120665]
1w6i
automatically matched to d1lf3a_
complexed with ihn
region c:1-329
[120666]
2r9b
automatically matched to d1lf3a_
complexed with dcl
region a:1-329
[151764]
2r9b
automatically matched to d1lf3a_
complexed with dcl
region b:1-329
[151765]
1me6
complexed with ivs
chain a
[91247]
chain b
[91248]
1sme
complexed with ihn
chain a
[26885]
chain b
[26886]
1xe6
automatically matched to d1lf3a_
complexed with 5fp
region a:1-329
[121908]
1xe6
automatically matched to d1lf3a_
complexed with 5fp
region b:1-329
[121909]
Plasmodium falciparum, plasmepsin IV
[TaxId: 5833]
[74986] (1)
1ls5
complexed with ihn
chain a
[74240]
chain b
[74241]
Plasmodium vivax
[TaxId: 5855]
[50675] (2)
1qs8
complexed with act, iva, sta
chain a
[26887]
chain b
[26888]
1miq
proenzyme
chain a
[79151]
chain b
[79152]
Xylanase inhibitor TAXI-I [110247]
pepsin-like protein that probably lost the protease activity
Wheat (Triticum aestivum)
[TaxId: 4565]
[110248] (3)
SQ
Q8H0K8
22-402
1t6e
complexed with gol
chain x
[106564]
1t6g
complexed with gol
chain a
[106567]
chain b
[106568]
2b42
region a:1-381
[144949]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk