Structural Classification of Proteins
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Superfamily: ADC-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Double psi beta-barrel [50684]
    barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
  4. Superfamily: ADC-like [50692]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Pyruvoyl dependent aspartate decarboxylase, ADC [50693] (2)
    1. Pyruvoyl dependent aspartate decarboxylase, ADC [50694]
      autocatalytic enzyme
      1. Escherichia coli [TaxId: 562] [50695] (9)
        1. 1ppy picpic
          native precursor
          complexed with sul
          1. chain a [94982] picpiclink
          2. chain b [94983] picpiclink
        2. 1aw8 picpic
          mature enzyme
          complexed with pvl, seg
          1. chain a,b [26901] picpiclink
          2. chain d,e [26902] picpiclink
        3. 1pqh picpic
          unprocessed mutant
          1. chain a [95017] picpiclink
          2. chain b [95018] picpiclink
        4. 1pt1 picpic
          unprocessed mutant
          1. chain a [95084] picpiclink
          2. chain b [95085] picpiclink
        5. 1pyq picpic
          unprocessed mutant
          1. chain a [95372] picpiclink
          2. chain b [95373] picpiclink
        6. 1pyu picpic
          processed mutant
          1. chain a,b [95374] picpiclink
          2. chain c,d [95375] picpiclink
        7. 1pqe picpic
          unprocessed mutant
          1. chain a [95014] picpiclink
        8. 1pqf picpic
          unprocessed mutant
          1. chain a [95015] picpiclink
          2. chain b [95016] picpiclink
        9. 1pt0 picpic
          unprocessed mutant
          complexed with sul
          1. chain a [95082] picpiclink
          2. chain b [95083] picpiclink
      2. Helicobacter pylori [TaxId: 210] [110249] (2)
        SQ P56065
        1. 1uhe picpic
          complexed with nsn
          1. chain b,a [107847] picpiclink
        2. 1uhd picpic
          complexed with pvl
          1. chain b,a [107846] picpiclink
  2. Formate dehydrogenase/DMSO reductase, C-terminal domain [50696] (12)
    molybdopterine enzyme
    1. Dimethylsulfoxide reductase (DMSO reductase) [50697]
      1. Rhodobacter sphaeroides [TaxId: 1063] [50698] (1)
        1. 1eu1 picpicxref
          complexed with 6mo, cd, epe, glc, mgd, ox, so4
          1. region a:626-780 [26903] picpiclink
      2. Rhodobacter capsulatus [TaxId: 1061] [50699] (10)
        1. 1dmr picpicxref
          complexed with 6mo, o, pgd
          1. region a:626-781 [26904] picpiclink
        2. 4dmr picpicxref
          complexed with 4mo, dms, o, pgd
          1. region a:626-781 [26905] picpiclink
        3. 1dms picpicxref
          complexed with mm4, pgd
          1. region a:626-781 [26906] picpiclink
        4. 1e18 picpicxref
          Tungsten-substituted
          complexed with 6wo, eoh, pgd
          1. region a:626-781 [26907] picpiclink
        5. 1h5n picpicxref
          complexed with 6mo, pgd, so4
          1. region a:626-781 [70894] picpiclink
          2. region c:626-781 [70896] picpiclink
        6. 1e61 picpicxref
          complexed with 2mo, pgd, so4
          1. region a:626-781 [26908] picpiclink
          2. region c:626-781 [26909] picpiclink
        7. 1e60 picpicxref
          complexed with 2mo, pgd, so4
          1. region a:626-781 [26910] picpiclink
          2. region c:626-781 [26911] picpiclink
        8. 1e5v picpicxref
          complexed with 2mo, pgd, so4
          1. region a:626-781 [26912] picpiclink
          2. region c:626-781 [26913] picpiclink
        9. 3dmr picpicxref
          complexed with 6mo, o, pgd
          1. region a:626-781 [26914] picpiclink
        10. 2dmr picpicxref
          complexed with 4mo, o, pgd, so2
          1. region a:626-781 [26915] picpiclink
    2. Formate dehydrogenase H [50700]
      1. Escherichia coli [TaxId: 562] [50701] (4)
        1. 2iv2 picpicxref
          automatically matched to d1aa6_1
          complexed with 2md, cse, mgd, mo, s, sf4
          1. region x:565-715 [137714] picpiclink
        2. 1aa6 picpicxref
          complexed with 4mo, cse, fs4, mgd
          1. region a:565-715 [26916] picpiclink
        3. 1fdo picpicxref
          complexed with 6mo, cse, fs4, mgd
          1. region a:565-715 [26917] picpiclink
        4. 1fdi picpicxref
          complexed with 6mo, cse, fs4, mgd, no2
          1. region a:565-715 [26918] picpiclink
    3. Formate dehydrogenase N, alpha subunit [74987]
      1. Escherichia coli [TaxId: 562] [74988] (2)
        1. 1kqf picpicxrefxrefxrefxref
          complexed with 6mo, cdl, cse, fs4, hem, mgd
          1. region a:851-1015 [72871] picpiclink
        2. 1kqg picpicxrefxrefxrefxref
          complexed with 6mo, cdl, cse, fs4, hem, hq, mgd
          1. region a:851-1015 [72875] picpiclink
    4. Tungsten containing formate dehydrogenase, large subunit [82138]
      1. Desulfovibrio gigas [TaxId: 879] [82139] (1)
        1. 1h0h picpicxrefxref
          complexed with 2md, ca, cse, epe, fs4, mgd, s, w
          1. region a:813-977 [76435] picpiclink
          2. region k:813-977 [76438] picpiclink
    5. Trimethylamine N-oxide reductase [50702]
      1. Shewanella massilia [TaxId: 76854] [50703] (1)
        1. 1tmo picpicxref
          complexed with 2md, 2mo
          1. region a:632-798 [26919] picpiclink
    6. Arsenite oxidase large subunit [50704]
      1. Alcaligenes faecalis [TaxId: 511] [50705] (2)
        1. 1g8k picpicxrefxref
          complexed with 4mo, edo, fes, fs3, hg, mgd, oc2, oc6, oxo
          1. region a:683-825 [26920] picpiclink
          2. region c:683-825 [26921] picpiclink
          3. region e:683-825 [26922] picpiclink
          4. region g:683-825 [26923] picpiclink
        2. 1g8j picpicxrefxref
          complexed with 4mo, fes, fs3, mgd, oxo
          1. region a:683-825 [26924] picpiclink
          2. region c:683-825 [26925] picpiclink
    7. Periplasmic nitrate reductase alpha chain, NapA [50706]
      1. Desulfovibrio desulfuricans [TaxId: 876] [50707] (8)
        dissimilatory nitrate reductase (NAP)
        1. 2jio picpicxref
          automatically matched to d2napa1
          complexed with mgd, mo, s, sf4
          1. region a:601-723 [148093] picpiclink
        2. 2v3v picpicxref
          automatically matched to d2napa1
          complexed with lcp, mgd, mo, s, sf4
          1. region a:601-723 [152463] picpiclink
        3. 2nap picpicxref
          complexed with fs4, mes, mgd, mo
          1. region a:601-723 [26926] picpiclink
        4. 2jir picpicxref
          automatically matched to d2napa1
          complexed with cyn, mgd, mo, no2, sf4
          1. region a:601-723 [148099] picpiclink
        5. 2jip picpicxref
          automatically matched to d2napa1
          complexed with mgd, mo, s, sf4
          1. region a:601-723 [148095] picpiclink
        6. 2v45 picpicxref
          automatically matched to d2napa1
          complexed with lcp, mgd, mo, s, sf4
          1. region a:601-723 [152483] picpiclink
        7. 2jiq picpicxref
          automatically matched to d2napa1
          complexed with mgd, mo, no2, no3, s, sf4
          1. region a:601-723 [148097] picpiclink
        8. 2jim picpicxref
          automatically matched to d2napa1
          complexed with mgd, mo, s, sf4
          1. region a:601-723 [148091] picpiclink
      2. Rhodobacter sphaeroides [TaxId: 1063] [101827] (1)
        1. 1ogy picpicxrefxref
          complexed with hec, mgd, mo, sf4
          1. region a:682-801 [92952] picpiclink
          2. region c:682-801 [92955] picpiclink
          3. region e:682-801 [92958] picpiclink
          4. region g:682-801 [92961] picpiclink
          5. region i:682-801 [92964] picpiclink
          6. region k:682-801 [92967] picpiclink
          7. region m:682-801 [92970] picpiclink
          8. region o:682-801 [92973] picpiclink
    8. Respiratory nitrate reductase 1 alpha chain [101828]
      1. Escherichia coli [TaxId: 562] [101829] (7)
        SQ P09152
        1. 1y5i picpicxrefxrefxref
          automatically matched to d1r27a1
          complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4; mutant
          1. region a:1075-1244 [122639] picpiclink
        2. 1q16 picpicxrefxrefxref
          complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4
          1. region a:1075-1244 [95546] picpiclink
        3. 1y4z picpicxrefxrefxref
          automatically matched to d1r27a1
          complexed with 6mo, aga, f3s, hem, md1, pci, sf4; mutant
          1. region a:1075-1244 [122629] picpiclink
        4. 1r27 picpicxrefxref
          complexed with f3s, fs4, mgd, mo
          1. region a:1075-1246 [96848] picpiclink
          2. region c:1075-1246 [96851] picpiclink
        5. 1siw picpicxrefxrefxref
          complexed with 3ph, f3s, gdp, hem, sf4
          1. region a:1075-1243 [105589] picpiclink
        6. 1y5l picpicxrefxrefxref
          automatically matched to d1r27a1
          complexed with 3ph, 6mo, f3s, hem, md1, sf4; mutant
          1. region a:1075-1244 [122642] picpiclink
        7. 1y5n picpicxrefxrefxref
          automatically matched to d1r27a1
          complexed with 3ph, 6mo, aga, f3s, hem, md1, pci, sf4; mutant
          1. region a:1075-1244 [122647] picpiclink
    9. Transhydroxylase alpha subunit, AthL [110250]
      1. Pelobacter acidigallici [TaxId: 35816] [110251] (6)
        SQ P80563
        1. 1vlf picpicxrefxrefxref
          complexed with 4mo, btt, ca, fs4, mgd
          1. region m:729-875 [108792] picpiclink
          2. region o:729-875 [108796] picpiclink
          3. region q:729-875 [108800] picpiclink
          4. region s:729-875 [108804] picpiclink
          5. region u:729-875 [108808] picpiclink
          6. region w:729-875 [108812] picpiclink
        2. 1ti6 picpicxrefxrefxref
          complexed with 4mo, btt, ca, fs4, mgd
          1. region a:729-875 [106974] picpiclink
          2. region c:729-875 [106978] picpiclink
          3. region e:729-875 [106982] picpiclink
          4. region g:729-875 [106986] picpiclink
          5. region i:729-875 [106990] picpiclink
          6. region k:729-875 [106994] picpiclink
        3. 1vle picpicxrefxrefxref
          complexed with 4mo, ca, fs4, mgd, pyg
          1. region m:729-875 [108768] picpiclink
          2. region o:729-875 [108772] picpiclink
          3. region q:729-875 [108776] picpiclink
          4. region s:729-875 [108780] picpiclink
          5. region u:729-875 [108784] picpiclink
          6. region w:729-875 [108788] picpiclink
        4. 1ti4 picpicxrefxrefxref
          complexed with 4mo, ca, fs4, mgd, pyg
          1. region a:729-875 [106950] picpiclink
          2. region c:729-875 [106954] picpiclink
          3. region e:729-875 [106958] picpiclink
          4. region g:729-875 [106962] picpiclink
          5. region i:729-875 [106966] picpiclink
          6. region k:729-875 [106970] picpiclink
        5. 1vld picpicxrefxrefxref
          complexed with 4mo, act, ca, fs4, mgd
          1. region m:729-875 [108744] picpiclink
          2. region o:729-875 [108748] picpiclink
          3. region q:729-875 [108752] picpiclink
          4. region s:729-875 [108756] picpiclink
          5. region u:729-875 [108760] picpiclink
          6. region w:729-875 [108764] picpiclink
        6. 1ti2 picpicxrefxrefxref
          complexed with 4mo, act, ca, fs4, mgd
          1. region a:729-875 [106926] picpiclink
          2. region c:729-875 [106930] picpiclink
          3. region e:729-875 [106934] picpiclink
          4. region g:729-875 [106938] picpiclink
          5. region i:729-875 [106942] picpiclink
          6. region k:729-875 [106946] picpiclink
    10. NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain [141393]
      topoisomer of the common fold, lacking the second psi loop
      1. Thermus thermophilus [TaxId: 274] [141394] (4)
        SQ Q56223 686-767
        1. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with fes, fmn, sf4
          1. region 3:686-767 [134125] picpiclink
        2. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FUG 3:686-767
          complexed with fes, fmn, sf4
          1. region c:686-767 [134138] picpiclink
        3. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FUG 3:686-767
          complexed with fes, fmn, sf4
          1. region l:686-767 [134151] picpiclink
        4. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FUG 3:686-767
          complexed with fes, fmn, sf4
          1. region u:686-767 [134164] picpiclink
  3. Cdc48 N-terminal domain-like [50708] (5)
    1. N-terminal domain of NSF-N, NSF-Nn [50709]
      NSF-N, the N-terminal 'functional' domain of the N-ethylmaleimide sensitive fusion protein, consists of two structural domains
      1. Hamster (Cricetulus griseus) [TaxId: 10029] [50710] (2)
        1. 1qcs picpicxref
          complexed with so4
          1. region a:0-85 [26927] picpiclink
        2. 1qdn picpicxref
          complexed with bme, so4
          1. region a:1-85 [26928] picpiclink
          2. region b:1-85 [26929] picpiclink
          3. region c:1-85 [26930] picpiclink
      2. Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932] [50711] (1)
        1. 1cr5 picpicxref
          1. region a:26-107 [26931] picpiclink
          2. region b:23-107 [26932] picpiclink
          3. region c:26-107 [26933] picpiclink
    2. N-terminal domain of VAT-N, VAT-Nn [50712]
      VAT-N is the N-terminal 'functional' domain of the VCP-like ATPase
      1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [50713] (2)
        1. 1cz5 picpicxref
          1. region a:1-91 [26935] picpiclink
        2. 1cz4 picpicxref
          1. region a:1-91 [26934] picpiclink
    3. Membrane fusion ATPase p97 N-terminal domain , P97-Nn [63796]
      1. Mouse (Mus musculus) [TaxId: 10090] [63797] (5)
        1. 1e32 picpicxrefxref
          complexed with adp
          1. region a:21-106 [59183] picpiclink
        2. 2pjh picpicxref
          automatically matched to d1r7ra1
          1. region b:21-106 [149563] picpiclink
        3. 1r7r picpicxrefxref
          complexed with adp
          1. region a:17-106 [97203] picpiclink
        4. 1oz4 picpicxrefxref
          complete low resolution structure
          complexed with adp, af3, zn
          1. region a:27-106 [93793] picpiclink
          2. region b:27-106 [93797] picpiclink
          3. region c:27-106 [93801] picpiclink
        5. 1s3s picpicxrefxrefxref
          complexed with adp
          1. region a:23-106 [98439] picpiclink
          2. region b:23-106 [98442] picpiclink
          3. region c:22-106 [98445] picpiclink
          4. region d:23-106 [98448] picpiclink
          5. region e:23-106 [98451] picpiclink
          6. region f:18-106 [98454] picpiclink
    4. Peroxisome biogenesis factor 1 (PEX-1), N-terminal domain [110252]
      1. Mouse (Mus musculus) [TaxId: 10090] [110253] (1)
        SQ Q5BL07 13-179
        1. 1wlf picpicxref
          complexed with so4
          1. region a:13-99 [109397] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk