Structural Classification of Proteins
home mail help root up expand collapse

Family: Hydantoinase (dihydropyrimidinase), catalytic domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Metallo-dependent hydrolases [51556]
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
    link to SUPERFAMILY database - Superfamily
  5. Family: Hydantoinase (dihydropyrimidinase), catalytic domain [75073]

Protein Domains:

  1. D-hydantoinase [75074]
    1. Thermus sp. [TaxId: 275] [75075] (2)
      1. 1gkp picpicxref
        complexed with epe, kcx, so4, zn
        1. region a:55-389 [70232] picpiclink
        2. region b:55-389 [70234] picpiclink
        3. region c:55-389 [70236] picpiclink
        4. region d:55-389 [70238] picpiclink
        5. region e:55-389 [70240] picpiclink
        6. region f:55-389 [70242] picpiclink
      2. 1gkq picpicxref
        complexed with kcx, zn
        1. region a:55-389 [70244] picpiclink
        2. region b:55-389 [70246] picpiclink
        3. region c:55-389 [70248] picpiclink
        4. region d:55-389 [70250] picpiclink
    2. Bacillus stearothermophilus [TaxId: 1422] [75076] (1)
      1. 1k1d picpicxref
        complexed with kcx, zn
        1. region a:53-384 [71980] picpiclink
        2. region b:53-384 [71982] picpiclink
        3. region c:53-384 [71984] picpiclink
        4. region d:53-384 [71986] picpiclink
        5. region e:53-384 [71988] picpiclink
        6. region f:53-384 [71990] picpiclink
        7. region g:53-384 [71992] picpiclink
        8. region h:53-384 [71994] picpiclink
    3. Burkholderia pickettii [TaxId: 329] [89488] (1)
      1. 1nfg picpicxref
        complexed with kcx, zn
        1. region a:52-381 [85633] picpiclink
        2. region b:52-381 [85635] picpiclink
        3. region c:52-381 [85637] picpiclink
        4. region d:52-381 [85639] picpiclink
    4. Bacillus sp. AR9 [TaxId: 301298] [141802] (2)
      SQ Q5DLU2 2-460
      1. 1yny picpicxrefxref
        complexed with mn
        1. region a:53-384 [123765] picpiclink
      2. 1yny picpicxrefxref
        automatically matched to 1YNY A:53-384
        complexed with mn
        1. region b:53-384 [123767] picpiclink
  2. L-hydantoinase [75077]
    1. Arthrobacter aurescens [TaxId: 43663] [75078] (1)
      1. 1gkr picpicxref
        complexed with kcx, zn
        1. region a:55-379 [70252] picpiclink
        2. region b:55-379 [70254] picpiclink
        3. region c:55-379 [70256] picpiclink
        4. region d:55-379 [70258] picpiclink
  3. Dihydropyrimidinase related protein-1 [102084]
    1. Mouse (Mus musculus) [TaxId: 10090] [102085] (1)
      1. 1kcx picpicxref
        structural genomics; NYSGR target T-45
        1. region a:67-400 [90954] picpiclink
        2. region b:67-400 [90956] picpiclink
  4. Two-domain dihydroorotase [141803]
    1. Aquifex aeolicus [TaxId: 63363] [141804] (3)
      SQ O66990 56-365
      1. 1xrt picpicxrefxref
        automatically matched to 1XRF A:56-365
        complexed with zn
        1. region a:56-365 [122259] picpiclink
      2. 1xrt picpicxrefxref
        automatically matched to 1XRF A:56-365
        complexed with zn
        1. region b:56-365 [122261] picpiclink
      3. 1xrf picpicxref
        complexed with so4, zn
        1. region a:56-365 [122255] picpiclink
  5. Dihydropyrimidine amidohydrolase Pyd2 [141805]
    1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [141806] (12)
      SQ Q9P903 57-440
      1. 2fvk picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with duc, zn
        1. region a:57-440 [134205] picpiclink
      2. 2fvk picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with duc, zn
        1. region b:57-440 [134207] picpiclink
      3. 2fvk picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with duc, zn
        1. region c:57-440 [134209] picpiclink
      4. 2fvk picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with duc, zn
        1. region d:57-440 [134211] picpiclink
      5. 2fvm picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with urp, zn
        1. region a:57-440 [134213] picpiclink
      6. 2fvm picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with urp, zn
        1. region b:57-440 [134215] picpiclink
      7. 2fvm picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with urp, zn
        1. region c:57-440 [134217] picpiclink
      8. 2fvm picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with urp, zn
        1. region d:57-440 [134219] picpiclink
      9. 2fty picpicxrefxrefxrefxref
        complexed with zn
        1. region a:57-440 [134088] picpiclink
      10. 2fty picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with zn
        1. region b:57-440 [134090] picpiclink
      11. 2fty picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with zn
        1. region c:57-440 [134092] picpiclink
      12. 2fty picpicxrefxrefxrefxref
        automatically matched to 2FTY A:57-440
        complexed with zn
        1. region d:57-440 [134094] picpiclink
    2. Dictyostelium discoideum [TaxId: 44689] [141807] (1)
      SQ Q86LT2 60-393
      1. 2ftw picpicxref
        complexed with mli, zn
        1. region a:60-393 [134084] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk