Structural Classification of Proteins

Superfamily: Enolase C-terminal domain-like

: binds metal ion (magnesium or manganese) in conserved site inside barrel
N-terminal alpha+beta domain is common to this superfamily
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: TIM beta/alpha-barrel [51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily: Enolase C-terminal domain-like [51604]
binds metal ion (magnesium or manganese) in conserved site inside barrel
N-terminal alpha+beta domain is common to this superfamily
uperfamily

Families:

Enolase [51605] (8)
1. Enolase [51606]
  Fold of this protein slightly differs from common fold in topology
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51607] (18)
    1. 2al1
      automatically matched to d1ebga1
      complexed with 2pg, cl, k, mg, pep
      1. region a:142-436 [126949]
    2. 2al1
      automatically matched to d1ebga1
      complexed with 2pg, cl, k, mg, pep
      1. region b:142-436 [126951]
    3. 1p43
      complexed with mg, pag; mutant
      1. region a:142-436 [94072]
      2. region b:642-936 [94074]
    4. 1one
      complexed with mg, pag, pep
      1. region a:142-436 [29200]
      2. region b:142-436 [29201]
    5. 4enl
      complexed with so4, zn
      1. region a:142-436 [29202]
    6. 1p48
      complexed with mg, pep; mutant
      1. region a:142-436 [94085]
      2. region b:642-936 [94087]
    7. 1l8p
      complexed with mg, pah; mutant
      1. region a:142-436 [73692]
      2. region b:642-936 [73694]
      3. region c:1142-1436 [73696]
      4. region d:1642-1936 [73698]
    8. 2al2
      automatically matched to d1ebga1
      complexed with 2pg, cl, k, mg, pep
      1. region a:142-436 [126953]
    9. 2al2
      automatically matched to d1ebga1
      complexed with 2pg, cl, k, mg, pep
      1. region b:142-436 [126955]
    10. 1ebh
      complexed with cl, mg
      1. region a:142-436 [29205]
      2. region b:142-436 [29206]
    11. 2one
      complexed with li, mg, pag, pep
      1. region a:142-436 [29203]
      2. region b:142-436 [29204]
    12. 5enl
      complexed with 2pg, ca
      1. region a:142-436 [29207]
    13. 6enl
      complexed with 2pl, zn
      1. region a:142-436 [29208]
    14. 3enl
      complexed with so4
      1. region a:142-436 [29211]
    15. 1ebg
      complexed with mg, pah
      1. region a:142-436 [29209]
      2. region b:142-436 [29210]
    16. 7enl
      complexed with 2pg, mg
      1. region a:142-436 [29212]
    17. 1els
      complexed with mn, pah
      1. region a:142-436 [29213]
    18. 1nel
      complexed with f f, mg, po4
      1. region a:142-436 [29214]
  2. European lobster (Homarus vulgaris) [TaxId: 6707] [51608] (2)
    1. 1pdz
      complexed with mn, pga
      1. region a:140-433 [29215]
    2. 1pdy
      complexed with so4
      1. region a:140-433 [29216]
  3. Trypanosoma brucei brucei [TaxId: 5702] [89497] (1)
    1. 1oep
      complexed with edo, so4, zn
      1. region a:139-429 [86918]
  4. Enterococcus hirae [TaxId: 1354] [89498] (1)
    1. 1iyx
      complexed with cry, mg, so4
      1. region a:137-431 [83815]
      2. region b:137-431 [83817]
  5. Escherichia coli [TaxId: 562] [69396] (5)
    1. 2fym
      automatically matched to d1e9id1
      complexed with mg
      1. region a:140-431 [134379]
    2. 2fym
      automatically matched to d1e9id1
      complexed with mg
      1. region c:140-430 [134381]
    3. 2fym
      automatically matched to d1e9id1
      complexed with mg
      1. region d:140-430 [134383]
    4. 2fym
      automatically matched to d1e9id1
      complexed with mg
      1. region f:140-431 [134385]
    5. 1e9i
      CASP4
      complexed with mg, so4
      1. region a:140-430 [64818]
      2. region b:140-430 [64820]
      3. region c:140-428 [64822]
      4. region d:140-431 [64824]
  6. Human (Homo sapiens), gamma isoform [TaxId: 9606] [110371] (5)
    SQ P09104
    1. 2akz
      automatically matched to d1te6a1
      complexed with f, mg, po4, trs
      1. region a:140-433 [126944]
    2. 2akz
      automatically matched to d1te6a1
      complexed with f, mg, po4, trs
      1. region b:1140-1432 [126946]
    3. 1te6
      complexed with cl, mg, po4, trs
      1. region a:140-433 [106797]
      2. region b:140-433 [106799]
    4. 2akm
      automatically matched to d1te6a1
      complexed with mg, po4, trs
      1. region a:140-433 [126919]
    5. 2akm
      automatically matched to d1te6a1
      complexed with mg, po4, trs
      1. region b:140-432 [126921]
  7. Streptococcus pneumoniae [TaxId: 1313] [141843] (2)
    SQ Q8DPS0 138-433
    1. 1w6t
      complexed with 2pe, mg
      1. region a:138-433 [120670]
    2. 1w6t
      automatically matched to 1W6T A:138-433
      complexed with 2pe, mg
      1. region b:138-433 [120672]
  8. Trypanosoma brucei [TaxId: 5691] [159415] (6)
    1. 2ptz
      automatically matched to d1oepa1
      complexed with edo, pah, zn; mutant
      1. region a:139-429 [149844]
    2. 2pu1
      automatically matched to d1oepa1
      complexed with edo, fsg, zn; mutant
      1. region a:139-429 [149848]
    3. 2ptx
      automatically matched to d1oepa1
      complexed with edo, so4, zn; mutant
      1. region a:139-429 [149840]
    4. 2pu0
      automatically matched to d1oepa1
      complexed with edo, pah, zn; mutant
      1. region a:139-429 [149846]
    5. 2pty
      automatically matched to d1oepa1
      complexed with edo, pep, zn; mutant
      1. region a:139-429 [149842]
    6. 2ptw
      automatically matched to d1oepa1
      complexed with edo, so4, zn; mutant
      1. region a:139-429 [149838]
D-glucarate dehydratase-like [51609] (20)
1. D-glucarate dehydratase [51610]
  1. Pseudomonas putida [TaxId: 303] [51611] (1)
    1. 1bqg
      1. region a:144-422 [29217]
  2. Escherichia coli [TaxId: 562] [51612] (6)
    1. 1jdf
      complexed with ipa, kgr, mg; mutant
      1. region a:138-446 [62897]
      2. region b:138-446 [62899]
      3. region c:138-446 [62901]
      4. region d:138-446 [62903]
    2. 1ec7
      complexed with ipa, mg
      1. region a:138-446 [29218]
      2. region b:138-446 [29219]
      3. region c:138-446 [29220]
      4. region d:138-446 [29221]
    3. 1ec8
      complexed with glr, ipa, mg
      1. region a:138-446 [29222]
      2. region b:138-446 [29223]
      3. region c:138-446 [29224]
      4. region d:138-446 [29225]
    4. 1ec9
      complexed with ipa, mg, xyh
      1. region a:138-446 [29226]
      2. region b:138-446 [29227]
      3. region c:138-446 [29228]
      4. region d:138-446 [29229]
    5. 1ecq
      complexed with dxg, ipa, mg
      1. region a:138-446 [29230]
      2. region b:138-446 [29231]
      3. region c:138-446 [29232]
      4. region d:138-446 [29233]
    6. 1jct
      complexed with gkr, ipa, mg; mutant
      1. region a:138-446 [62882]
      2. region b:138-446 [62884]
2. O-succinylbenzoate synthase [51613]
  1. Escherichia coli [TaxId: 562] [51614] (7)
    1. 1r6w
      complexed with 164, mg; mutant
      1. region a:100-320 [97165]
    2. 1fhu
      1. region a:100-320 [29234]
    3. 1fhv
      complexed with mg, osb
      1. region a:100-320 [29235]
    4. 2ofj
      automatically matched to d1fhua1
      mutant
      1. region a:100-320 [139044]
    5. 2ofj
      automatically matched to d1fhua1
      mutant
      1. region b:100-320 [139046]
    6. 2ofj
      automatically matched to d1fhua1
      mutant
      1. region c:100-320 [139048]
    7. 2ofj
      automatically matched to d1fhua1
      mutant
      1. region d:100-320 [139050]
3. Muconate-lactonizing enzyme [51615]
  1. Pseudomonas putida [TaxId: 303] [51616] (5)
    1. 1muc
      complexed with mn
      1. region a:131-372 [29236]
      2. region b:131-372 [29237]
    2. 1bkh
      1. region a:131-372 [29238]
      2. region b:131-372 [29239]
      3. region c:131-372 [29240]
    3. 3muc
      complexed with mn; mutant
      1. region a:131-372 [29243]
      2. region b:131-372 [29244]
    4. 2muc
      complexed with mn; mutant
      1. region a:131-372 [29241]
      2. region b:131-372 [29242]
    5. 1f9c
      complexed with mn; mutant
      1. region a:131-372 [59728]
      2. region b:131-372 [59730]
4. Mandelate racemase [51617]
  1. Pseudomonas putida [TaxId: 303] [51618] (6)
    1. 2mnr
      complexed with mn, so4
      1. region a:133-359 [29245]
    2. 1mns
      complexed with apg, mg
      1. region a:133-359 [29246]
    3. 1mdr
      complexed with mg, saa
      1. region a:133-359 [29248]
    4. 1mdl
      complexed with mg, rmn, smn; mutant
      1. region a:133-359 [29247]
    5. 1dtn
      complexed with mg, saa; mutant
      1. region a:133-359 [29249]
    6. 1mra
      complexed with mg, saa; mutant
      1. region a:133-359 [29250]
5. Chlormuconate cycloisomerase [51619]
  1. Alcaligenes eutrophus [TaxId: 106590] [51620] (2)
    1. 2chr
      complexed with cl, mn
      1. region a:127-370 [29251]
    2. 1chr
      complexed with cl, mn
      1. region a:127-370 [29252]
      2. region b:127-370 [29253]
  2. Pseudomonas sp. p51 [TaxId: 65067] [102096] (1)
    1. 1nu5
      complexed with mn
      1. region a:127-369 [92183]
6. L-Ala-D/L-Glu epimerase [69397]
  1. Escherichia coli [TaxId: 562] [69398] (1)
    1. 1jpd
      mutant
      1. region x:114-321 [67014]
  2. Bacillus subtilis [TaxId: 1423] [69399] (2)
    SQ O34508
    1. 1jpm
      complexed with gol, mg
      1. region a:126-359 [67031]
      2. region b:126-359 [67033]
      3. region c:126-358 [67035]
      4. region d:126-358 [67037]
    2. 1tkk
      complexed with ala, glu, mg
      1. region a:126-358 [107089]
      2. region b:126-358 [107091]
      3. region c:126-358 [107093]
      4. region d:126-358 [107095]
      5. region e:126-358 [107097]
      6. region f:126-358 [107099]
      7. region g:126-358 [107101]
      8. region h:126-358 [107103]
7. beta-Methylaspartase [69400]
  1. Clostridium tetanomorphum [TaxId: 1553] [69401] (2)
    1. 1kcz
      complexed with edo, mg
      1. region a:161-413 [68451]
      2. region b:161-413 [68453]
    2. 1kd0
      complexed with edo
      1. region a:161-413 [68455]
      2. region b:161-413 [68457]
  2. Citrobacter amalonaticus [TaxId: 35703] [69402] (2)
    1. 1kko
      complexed with sul
      1. region a:161-411 [68675]
      2. region b:161-411 [68677]
    2. 1kkr
      complexed with 3md, mg
      1. region a:161-411 [68683]
      2. region b:161-411 [68685]
8. Hypothetical protein Atu3453 [102097]
  1. Agrobacterium tumefaciens [TaxId: 358] [102098] (1)
    1. 1rvk
      structural genomics
      complexed with mg
      1. region a:127-381 [97928]
9. N-acylamino acid racemase [110372]
  1. Amycolatopsis sp. [TaxId: 37632] [110373] (4)
    SQ Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
    1. 1sjd
      complexed with npg
      1. region a:126-367 [105632]
      2. region b:126-368 [105634]
      3. region c:126-367 [105636]
      4. region d:126-367 [105638]
    2. 1sjc
      complexed with mg, smg
      1. region a:126-367 [105624]
      2. region b:126-368 [105626]
      3. region c:126-367 [105628]
      4. region d:126-368 [105630]
    3. 1sjb
      complexed with mg, osb
      1. region a:126-367 [105616]
      2. region b:126-368 [105618]
      3. region c:126-367 [105620]
      4. region d:126-368 [105622]
    4. 1sja
      complexed with ame, mg
      1. region a:126-368 [105608]
      2. region b:126-368 [105610]
      3. region c:126-368 [105612]
      4. region d:126-368 [105614]
  2. Deinococcus radiodurans [TaxId: 1299] [110374] (4)
    SQ Q9RYA6
    1. 1r0m
      1. region a:133-375 [104747]
      2. region b:133-375 [104749]
      3. region c:133-375 [104751]
      4. region d:133-375 [104753]
    2. 2fkp
      mutant
      1. region a:133-375 [133665]
    3. 1xpy
      complexed with mg, nlq
      1. region a:133-375 [115810]
      2. region b:133-375 [115812]
      3. region c:133-375 [115814]
      4. region d:133-375 [115816]
    4. 1xs2
      complexed with mg
      1. region a:133-375 [115898]
      2. region b:133-375 [115900]
      3. region c:133-375 [115902]
      4. region d:133-375 [115904]
  3. Enterococcus faecalis [TaxId: 1351] [117382] (1)
    SQ Q838J7; EF0450; protein assignment by sequence similarity
    1. 1wue
      Structural genomics target
      1. region a:1127-1367 [114892]
      2. region b:2127-2367 [114894]
  4. Listeria innocua [TaxId: 1642] [117383] (1)
    SQ Q927X3; Lin2664; protein assignment by sequence similarity
    1. 1wuf
      Structural genomics target
      complexed with mg
      1. region a:1127-1370 [114896]
      2. region b:2127-2370 [114898]
10. Hypothetical protein Bll6730 [117384]
  1. Bradyrhizobium japonicum [TaxId: 375] [117385] (21)
    SQ Q89FH0
    1. 1tzz
      Structural genomics target
      complexed with mg
      1. region a:1146-1392 [112896]
      2. region b:2146-2392 [112898]
    2. 2dw6
      automatically matched to d1tzza1
      complexed with mg, tar, tla; mutant
      1. region a:143-389 [131808]
    3. 2dw6
      automatically matched to d1tzza1
      complexed with mg, tar, tla; mutant
      1. region b:143-389 [131810]
    4. 2dw6
      automatically matched to d1tzza1
      complexed with mg, tar, tla; mutant
      1. region c:143-389 [131812]
    5. 2dw6
      automatically matched to d1tzza1
      complexed with mg, tar, tla; mutant
      1. region d:143-389 [131814]
    6. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region a:143-389 [131816]
    7. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region b:143-389 [131818]
    8. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region c:143-389 [131820]
    9. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region d:143-389 [131822]
    10. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region e:143-389 [131824]
    11. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region f:143-389 [131826]
    12. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region g:143-389 [131828]
    13. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region h:143-389 [131830]
    14. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region i:143-389 [131832]
    15. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region j:143-389 [131834]
    16. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region k:143-389 [131836]
    17. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region l:143-389 [131838]
    18. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region m:143-389 [131840]
    19. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region n:143-389 [131842]
    20. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region o:143-389 [131844]
    21. 2dw7
      automatically matched to d1tzza1
      complexed with mg, srt
      1. region p:143-389 [131846]
11. RTS beta protein [117386]
  1. Xanthomonas campestris pv. campestris [TaxId: 340] [117387] (1)
    SQ Q8P3K2; extended, mainly helical linker between the domains
    1. 1yey
      Structural genomics target
      complexed with mg
      1. region a:184-435 [116664]
      2. region b:184-432 [116666]
      3. region c:184-435 [116668]
      4. region d:184-435 [116670]
12. Hypothetical protein YitF [141844]
  1. Bacillus subtilis [TaxId: 1423] [141845] (10)
    SQ O06741 115-371
    1. 2gdq
      1. region a:119-374 [135020]
    2. 2gdq
      automatically matched to 2GDQ A:119-374
      1. region b:119-374 [135022]
    3. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region a:119-374 [135128]
    4. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region b:119-374 [135130]
    5. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region c:119-374 [135132]
    6. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region d:119-374 [135134]
    7. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region e:119-374 [135136]
    8. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region f:119-374 [135138]
    9. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region g:119-374 [135140]
    10. 2gge
      automatically matched to 2GDQ A:119-374
      complexed with cl, mg
      1. region h:119-374 [135142]
13. Putative dehydratase protein STM2273 [141846]
  1. Salmonella typhimurium [TaxId: 90371] [141847] (2)
    SQ Q8ZNH1 123-400
    1. 2gl5
      complexed with gol, mg; mutant
      1. region a:123-400 [135336]
    2. 2gl5
      automatically matched to 2GL5 A:123-400
      complexed with gol, mg; mutant
      1. region b:123-400 [135338]