Superfamily: Bacterial luciferase-like

consists of clearly related families of somewhat different folds
uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: TIM beta/alpha-barrel [51350]
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites
4. Superfamily: Bacterial luciferase-like [51679]
   consists of clearly related families of somewhat different folds
   uperfamily

Families:

1. Bacterial luciferase (alkanal monooxygenase) [51680] (2)
   typical (beta/alpha)8-barrel fold
   heterodimer of two similar chains
   1. Bacterial luciferase alpha chain, LuxA [88705]
      1. Vibrio harveyi [TaxId: 669] [88706] (3)
         1. 1luc
            heterodimer with beta chain
            complexed with edo, mg
            1. chain a [29547]
         2. 1brl
            heterodimer with beta chain
            complexed with po4
            1. chain a [29553]
         3. 1brl
            duplicate of 1BRL A
            complexed with po4
            1. chain c [118434]
   2. Bacterial luciferase beta chain, LuxB [88707]
      1. Vibrio harveyi [TaxId: 669] [88708] (5)
         1. 1luc
            heterodimer with alpha chain
            complexed with edo, mg
            1. chain b [29548]
         2. 1bsl
            beta2 homodimer
            1. chain a [29549]
            2. chain b [29550]
         3. 1xkj
            beta2 homodimer
            1. chain a [29551]
            2. chain b [29552]
         4. 1brl
            heterodimer with alpha chain
            complexed with po4
            1. chain b [29554]
         5. 1brl
            duplicate of 1BRL B
            complexed with po4
            1. chain d [118435]
2. Non-fluorescent flavoprotein (luxF, FP390) [51683] (2)
   incomplete beta/alpha barrel with mixed beta-sheet of 7 strands
   1. Non-fluorescent flavoprotein (luxF, FP390) [51684]
      1. Photobacterium leiognathi [TaxId: 553611] [51685] (1)
         1. 1nfp
            complexed with fmn, myr, so4
            1. chain a [29555]
      2. Photobacterium phosphoreum [TaxId: 659] [51686] (1)
         1. 1fvp
            complexed with fma
            1. chain a [29556]
            2. chain b [29557]
3. F420 dependent oxidoreductases [51687] (3)
   1. Coenzyme F420 dependent tetrahydromethanopterin reductase [51688]
      1. Archaeon Methanopyrus kandleri [TaxId: 2320] [51689] (1)
         1. 1ezw
            complexed with cl, mg
            1. chain a [29558]
      2. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [63924] (1)
         1. 1f07
            complexed with cl, mpd, mpo
            1. chain a [59560]
            2. chain b [59561]
            3. chain c [59562]
            4. chain d [59563]
   2. Coenzyme F420 dependent secondary alcohol dehydrogenase [102101]
      1. Archaeon Methanoculleus thermophilicus [TaxId: 2200] [102102] (1)
         1. 1rhc
            complexed with acn, cl, f42, k
            1. chain a [97468]
4. Ssud-like monoxygenases [82275] (2)
   1. Alkanesulfonate monooxygenase SsuD [82276]
      1. Escherichia coli [TaxId: 562] [82277] (2)
         1. 1nqk
            structural genomics
            1. chain a [92050]
         2. 1m41
            1. chain a [78595]
            2. chain b [78596]
   2. Putative monooxygenase YtnJ [110380]
      1. Bacillus subtilis [TaxId: 1423] [110381] (2)
         SQ O34974
         1. 1tvl
            1. chain a [107366]
         2. 1yw1
            automatically matched to d1tvla_
            complexed with fmn, glc
            1. region a:3-431 [124130]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk