Superfamily: tRNA-guanine transglycosylase

uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: TIM beta/alpha-barrel [51350]
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites
4. Superfamily: tRNA-guanine transglycosylase [51713]
   uperfamily

Families:

1. tRNA-guanine transglycosylase [51714] (2)
   1. Queosine tRNA-guanine transglycosylase [51715]
      contains zinc-binding subdomain
      1. Zymomonas mobilis [TaxId: 542] [51716] (34)
         SQ P28720
         1. 1r5y
            complexed with dqu, zn
            1. chain a [97134]
         2. 2z7k
            automatically matched to d1q2ra_
            complexed with bgu, gol, zn
            1. region a:11-382 [154198]
         3. 1y5w
            automatically matched to d1q2ra_
            complexed with gol, nez, zn
            1. region a:11-382 [122654]
         4. 1y5v
            automatically matched to d1q2ra_
            complexed with gol, ne8, zn
            1. region a:11-382 [122653]
         5. 1pxg
            complexed with gol, prf, zn; mutant
            1. chain a [95287]
         6. 1p0b
            complexed with pq0, zn
            1. chain a [93863]
         7. 2bbf
            automatically matched to d1q2ra_
            complexed with 344, zn
            1. region a:11-382 [128265]
         8. 1k4g
            complexed with aiq, zn
            1. chain a [72054]
         9. 1q66
            complexed with kmb, zn
            1. chain a [95959]
         10. 2qii
             automatically matched to d1q2ra_
             complexed with gol, pq0, zn
             1. region a:11-383 [150810]
         11. 1q63
             complexed with aiq, zn
             1. chain a [95957]
         12. 1s38
             complexed with maq, zn
             1. chain a [105234]
         13. 1k4h
             complexed with apq, zn
             1. chain a [72055]
         14. 1p0d
             complexed with zn
             1. chain a [93864]
         15. 1ozq
             complexed with prf, zn; mutant
             1. chain a [93854]
         16. 1pud
             complexed with zn
             1. chain a [29658]
         17. 1q4w
             complexed with dqu, zn
             1. chain a [95832]
         18. 1f3e
             complexed with dpz, zn
             1. chain a [29661]
         19. 1efz
             complexed with prf, zn; mutant
             1. chain a [29659]
         20. 1enu
             complexed with apz, zn
             1. chain a [29660]
         21. 1ozm
             complexed with zn; mutant
             1. chain a [93850]
         22. 2pwu
             automatically matched to d1q2ra_
             complexed with gol, gun, zn
             1. region a:11-383 [149904]
         23. 1s39
             complexed with aqo, zn
             1. chain a [112010]
         24. 1q65
             complexed with bhb, zn
             1. chain a [95958]
         25. 1n2v
             complexed with bdi, zn
             1. chain a [85288]
         26. 2qzr
             automatically matched to d1q2ra_
             complexed with gol, s79, zn
             1. region a:11-382 [151491]
         27. 1y5x
             automatically matched to d1q2ra_
             complexed with e89, zn
             1. region a:11-382 [122655]
         28. 1y5x
             automatically matched to d1q2ra_
             complexed with e89, zn
             1. region d:1011-1382 [122656]
         29. 1wke
             complexed with zn; mutant
             1. chain a [29663]
         30. 1wkf
             complexed with zn; mutant
             1. chain a [29662]
         31. 1p0e
             complexed with prf, zn
             1. chain a [93865]
         32. 1wkd
             complexed with zn; mutant
             1. chain a [29664]
         33. 1q2r
             complexed with 9dg, rob, zn
             1. chain a [95634]
             2. chain b [95635]
             3. chain c [95636]
             4. chain d [95637]
         34. 1q2s
             complexed with 9dg, pq1, rob, zn
             1. chain a [95638]
             2. chain b [95639]
             3. chain c [95640]
             4. chain d [95641]
   2. Archaeosine tRNA-guanine transglycosylase, N-terminal domain [75096]
      1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [75097] (4)
         1. 1iq8
            complexed with mg, zn
            1. region a:6-360 [71270]
            2. region b:6-360 [71272]
         2. 1it7
            complexed with gun, mg, zn
            1. region a:6-360 [71409]
            2. region b:6-360 [71411]
         3. 1it8
            complexed with mg, pq0, zn
            1. region a:6-360 [71413]
            2. region b:6-360 [71415]
         4. 1j2b
            complexed with mg, zn
            1. region a:7-360 [84011]
            2. region b:7-360 [84014]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk