Structural Classification of Proteins
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Superfamily: UROD/MetE-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: UROD/MetE-like [51726]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Uroporphyrinogen decarboxylase, UROD [51727] (2)
    1. Uroporphyrinogen decarboxylase, UROD [51728]
      1. Human (Homo sapiens) [TaxId: 9606] [51729] (11)
        1. 1r3s picpic
          complexed with 1cp; mutant
          1. chain a [96963] picpiclink
        2. 1r3t picpic
          complexed with cp3; mutant
          1. chain a [96964] picpiclink
        3. 1r3w picpic
          complexed with cp3; mutant
          1. chain a [96966] picpiclink
        4. 1r3y picpic
          complexed with cp3
          1. chain a [96967] picpiclink
        5. 1r3q picpic
          complexed with 1cp, co2
          1. chain a [96961] picpiclink
        6. 1r3r picpic
          mutant
          1. chain a [96962] picpiclink
        7. 1r3v picpic
          complexed with 1cp, bme; mutant
          1. chain a [96965] picpiclink
        8. 1uro picpic
          complexed with bme
          1. chain a [29675] picpiclink
        9. 1jph picpic
          mutant
          1. chain a [67022] picpiclink
        10. 1jpk picpic
          mutant
          1. chain a [67026] picpiclink
        11. 1jpi picpic
          mutant
          1. chain a [67023] picpiclink
      2. Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097] [69405] (1)
        1. 1j93 picpic
          complexed with so4
          1. chain a [66454] picpiclink
  2. Cobalamin-independent methionine synthase [110384] (1)
    Pfam 01717; duplication; consists of two related domains
    1. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE [110385]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [110386] (4)
        SQ O50008
        1. 1u1j picpic
          complexed with c2f, met, so4, zn
          1. region a:2-395 [107590] picpiclink
          2. region a:396-760 [107591] picpiclink
        2. 1u1h picpic
          complexed with met, so4, zn
          1. region a:2-395 [107580] picpiclink
          2. region a:396-760 [107581] picpiclink
        3. 1u22 picpic
          complexed with hcs, so4, thg, zn
          1. region a:2-395 [107608] picpiclink
          2. region a:396-760 [107609] picpiclink
        4. 1u1u picpic
          complexed with so4, zn
          1. region a:2-395 [107600] picpiclink
          2. region a:396-760 [107601] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk