Structural Classification of Proteins
Family: FMN-linked oxidoreductases
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a/b)
[51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold:
TIM beta/alpha-barrel
[51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily:
FMN-linked oxidoreductases
[51395]
uperfamily
Family:
FMN-linked oxidoreductases
[51396]
Protein Domains:
Dihydroorotate dehydrogenase [51397]
Lactococcus lactis, isozyme A
[TaxId: 1358]
[51398] (13)
1jub
complexed with fmn, gol, mg; mutant
chain a
[90908]
chain b
[90909]
1jqx
complexed with fmn, gol, mg, oro; mutant
chain a
[90902]
chain b
[90903]
1jrc
complexed with fmn, oro; mutant
chain a
[90906]
chain b
[90907]
1jue
complexed with acy, fmn, gol, mg
chain a
[90910]
chain b
[90911]
2dor
complexed with fmn, oro
chain a
[28593]
chain b
[28594]
1dor
complexed with fmn
chain a
[28595]
chain b
[28596]
1jrb
complexed with fmn, oro; mutant
chain a
[90904]
chain b
[90905]
1jqv
complexed with acy, fmn, mg, oro; mutant
chain a
[90900]
chain b
[90901]
2bx7
automatically matched to d1dora_
complexed with 34d, act, fmn, gol, mg
region a:1-311
[129395]
2bx7
automatically matched to d1dora_
complexed with 34d, act, fmn, gol, mg
region b:1-311
[129396]
1ovd
complexed with fmn, gol, mg, oro; mutant
chain a
[93593]
chain b
[93594]
2bsl
automatically matched to d1dora_
complexed with act, dhb, fmn, gol, mg
region a:1-311
[129095]
2bsl
automatically matched to d1dora_
complexed with act, dhb, fmn, gol, mg
region b:1-311
[129096]
Lactococcus lactis, isozyme B
[TaxId: 1358]
[51399] (3)
PyrD subunit
1ep3
complexed with fad, fes, fmn
chain a
[28597]
1ep1
complexed with fad, fes, fmn
chain a
[28598]
1ep2
complexed with fad, fes, fmn, oro
chain a
[28599]
Escherichia coli
[TaxId: 562]
[82239] (1)
1f76
complexed with fmn, fmt, mse, oro
chain a
[76160]
chain b
[76161]
chain d
[76162]
chain e
[76163]
Human (Homo sapiens)
[TaxId: 9606]
[51400] (11)
1d3g
complexed with act, bre, ddq, fmn, oro, so4
chain a
[28600]
1d3h
complexed with a26, act, fmn, oro, so4
chain a
[28601]
2fpv
automatically matched to d1d3ga_
complexed with act, fmn, ilc, oro, so4
region a:33-396
[133926]
2fqi
automatically matched to d1d3ga_
complexed with act, fmn, ilh, oro, so4
region a:34-396
[133955]
2fpy
automatically matched to d1d3ga_
complexed with act, fmn, ilf, oro, so4
region a:33-396
[133931]
2prl
automatically matched to d1d3ga_
complexed with act, ddq, fmn, oro, r2c, so4; mutant
region a:30-396
[149801]
2b0m
automatically matched to d1d3ga_
complexed with 201, fmn, oro
region a:33-396
[127644]
2bxv
automatically matched to d1d3ga_
complexed with 3ft, act, fmn, oro, so4
region a:30-396
[129445]
2fpt
automatically matched to d1d3ga_
complexed with act, fmn, ilb, oro, so4
region a:30-396
[133923]
2prh
automatically matched to d1d3ga_
complexed with 238, ddq, fmn, oro; mutant
region a:30-396
[149800]
2prm
automatically matched to d1d3ga_
complexed with fmn, oro; mutant
region a:30-396
[149802]
Rat (Rattus norvegicus)
[TaxId: 10116]
[102039] (2)
1uum
complexed with afi, bog, fmn, oro
chain a
[100010]
chain b
[100011]
1uuo
complexed with brf, fmn, na, ni, oro
chain a
[100014]
Trypanosoma brucei
[TaxId: 5691]
[141758] (4)
SQ
Q57U83
2-313
2b4g
complexed with br, fmn, gol, oro
region a:2-313
[127829]
2b4g
automatically matched to 2B4G A:2-313
complexed with br, fmn, gol, oro
region b:2-313
[127830]
2b4g
automatically matched to 2B4G A:2-313
complexed with br, fmn, gol, oro
region c:2-313
[127831]
2b4g
automatically matched to 2B4G A:2-313
complexed with br, fmn, gol, oro
region d:2-313
[127832]
Plasmodium falciparum
[TaxId: 5833]
[141759] (1)
SQ
Q08210
158-566
homolog, mitochonrial
1tv5
complexed with a26, fmn, n8e, oro, so4; mutant
region a:158-566
[119347]
Old yellow enzyme (OYE) [51401]
Lager yeast (Saccharomyces pastorianus)
[TaxId: 27292]
[51402] (5)
1oyb
complexed with fmn, hba
chain a
[28602]
1oya
complexed with fmn
chain a
[28604]
1oyc
complexed with fmn
chain a
[28603]
1k03
complexed with fmn, hba, mg; mutant
chain a
[63322]
1k02
complexed with fmn, mg; mutant
chain a
[63321]
Yeast (Candida albicans)
[TaxId: 5476]
[51403] (2)
1bwk
complexed with fmn; mutant
chain a
[28605]
1bwl
complexed with fmn; mutant
chain a
[28606]
12-oxophytodienoate reductase (OPR, OYE homolog) [63896]
Tomato (Lycopersicon esculentum), OPR1
[TaxId: 4081]
[63897] (3)
1icp
complexed with 2pe, cl, fmn, so4; mutant
chain a
[62270]
chain b
[62271]
1icq
complexed with fmn, opd; mutant
chain a
[62272]
chain b
[62273]
1ics
complexed with fmn; mutant
chain a
[62276]
chain b
[62277]
Thale cress (Arabidopsis thaliana), OPR1
[TaxId: 3702]
[102040] (2)
At1G76680
1vji
structural genomics
complexed with fmn
chain a
[100813]
2q3r
automatically matched to d1vjia_
complexed with fmn
region a:9-369
[139801]
Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]
[102041] (5)
1q45
complexed with fmn
chain a
[95780]
chain b
[95781]
2q3o
automatically matched to d1q45a_
complexed with fmn
region a:8-387
[139796]
2q3o
automatically matched to d1q45a_
complexed with fmn
region b:9-385
[139797]
2g5w
automatically matched to d1q45a_
complexed with 8pg, fmn
region a:8-387
[134682]
2g5w
automatically matched to d1q45a_
complexed with 8pg, fmn
region b:9-385
[134683]
Glycolate oxidase [51404]
Spinach (Spinacia oleracea)
[TaxId: 3562]
[51405] (4)
1gox
complexed with fmn
chain a
[28607]
1al8
complexed with dhp, fmn
chain a
[28608]
1al7
complexed with cst, fmn
chain a
[28609]
1gyl
complexed with fmn; mutant
chain a
[28610]
chain b
[28611]
Membrane-associated (S)-mandelate dehydrogenase [63898]
Pseudomonas putida
[TaxId: 303]
[63899] (3)
1p4c
complexed with fmn, mes, so4; mutant
chain a
[94100]
1p5b
complexed with fmn, mes, so4; mutant
chain a
[94133]
1huv
complexed with fmn, mes, so4; mutant
chain a
[61277]
Pentaerythritol tetranirate reductase [63900]
Enterobacter cloacae
[TaxId: 550]
[63901] (15)
SQ
P71278
1vyr
complexed with fmn, tnf
chain a
[108906]
2abb
complexed with fmn, ipr, scn; mutant
region a:4-364
[126517]
2aba
automatically matched to d1gvra_
complexed with fmn, ipr, str
region a:3-364
[126516]
1vyp
complexed with fmn, tnf; mutant
chain x
[108905]
1gvo
complexed with dnf, fmn
chain a
[76357]
1gvs
complexed with fmn, tnf
chain a
[83340]
1gvr
complexed with fmn, tnl
chain a
[83339]
1h61
complexed with fmn, pdn
chain a
[60657]
1h50
complexed with act, fmn
chain a
[60631]
1h51
complexed with fmn, scn
chain a
[90619]
1h63
complexed with fmn
chain a
[60659]
1h60
complexed with fmn, str
chain a
[60656]
1vys
complexed with fmn, tnf; mutant
chain x
[108907]
1h62
complexed with anb, fmn
chain a
[60658]
1gvq
complexed with cyh, fmn
chain a
[76358]
Morphinone reductase [75053]
Pseudomonas putida
[TaxId: 303]
[75054] (1)
1gwj
complexed with fmn
chain a
[70671]
Trimethylamine dehydrogenase, N-terminal domain [51406]
two other domains are alpha/beta Rossmann-like fold and beta/beta/alpha fold
Methylophilus methylotrophus, w3a1
[TaxId: 17]
[51407] (5)
1djq
region a:1-340
[28614]
region b:1-340
[28615]
1djn
region a:1-340
[28612]
region b:1-340
[28613]
1o94
complexed with adp, amp, fmn, sf4
region a:1-340
[81200]
region b:1-340
[81203]
2tmd
complexed with adp, fmn, fs4
region a:1-340
[28616]
region b:1-340
[28617]
1o95
complexed with adp, amp, fmn, fs4
region a:1-340
[81210]
region b:1-340
[81213]
2,4-dienoyl-CoA reductase, N-terminal domain [102042]
Escherichia coli
[TaxId: 562]
[102043] (1)
1ps9
complexed with cl, fad, fmn, fs4, mde, nap
region a:1-330
[95076]
Flavocytochrome b2, C-terminal domain [51408]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[51409] (16)
SQ
P00175
N-terminal domain homologous to cytochrome b5
1kbi
complexed with fmn, hem, mpd, po4, pyr
region a:98-511
[72277]
1kbi
complexed with fmn, hem, mpd, po4, pyr
chain b
[72279]
1kbj
complexed with egl, fmn
chain a
[72280]
chain b
[72281]
1ltd
complexed with fmn, hem, so3
region a:98-511
[28618]
1ltd
complexed with fmn, hem, so3
chain b
[28619]
1qcw
complexed with fns; mutant
chain a
[28622]
chain b
[28623]
1fcb
complexed with fmn, hem, pyr
chain b
[28621]
1fcb
complexed with fmn, hem, pyr
region a:98-511
[28620]
1lco
complexed with fmn, hem, ppy; mutant
region a:98-511
[28624]
1lco
complexed with fmn, hem, ppy; mutant
chain b
[28625]
1ldc
complexed with fmn, hem, pyr; mutant
chain b
[28627]
1ldc
complexed with fmn, hem, pyr; mutant
region a:98-511
[28626]
1szg
complexed with fns; mutant
chain a
[106155]
chain b
[106156]
1szf
complexed with fmn, pyr; mutant
chain a
[106153]
chain b
[106154]
1sze
complexed with 173, fmn; mutant
chain a
[106151]
chain b
[106152]
2oz0
automatically matched to d1fcba1
complexed with fmn, hem, pyr; mutant
region a:98-510
[149083]
Dihydropyrimidine dehydrogenase, domain 4 [51410]
Pig (Sus scrofa)
[TaxId: 9823]
[51411] (5)
1gte
complexed with fad, fmn, fs4, iur
region a:533-844
[70441]
region b:533-844
[70446]
region c:533-844
[70451]
region d:533-844
[70456]
1h7w
complexed with fad, fmn, fs4
region a:533-844
[28628]
region b:533-844
[28629]
region c:533-844
[28630]
region d:533-844
[28631]
1h7x
complexed with fad, fmn, fs4, ndp, urf; mutant
region a:533-844
[28632]
region b:533-844
[28633]
region c:533-844
[28634]
region d:533-844
[28635]
1gth
complexed with fad, fmn, fs4, idh, iur, ndp, ura
region a:533-844
[70484]
region b:533-844
[70489]
region c:533-844
[70494]
region d:533-844
[70499]
1gt8
complexed with fad, fmn, fs4, ndp, uaa
region a:533-844
[70419]
region b:533-844
[70424]
region c:533-844
[70429]
region d:533-844
[70434]
Alpha subunit of glutamate synthase, central and FMN domains [69381]
Central domain (residues 423-780) may be a rudiment form of the FMN domain
Azospirillum brasilense
[TaxId: 192]
[69382] (7)
1ea0
complexed with 2og, f3s, fmn
region a:423-1193
[64855]
region b:423-1193
[64858]
2vdc
automatically matched to d1ea0a2
complexed with akg, f3s, fad, fmn, sf4
region a:423-1193
[152974]
2vdc
automatically matched to d1ea0a2
complexed with akg, f3s, fad, fmn, sf4
region b:423-1193
[152977]
2vdc
automatically matched to d1ea0a2
complexed with akg, f3s, fad, fmn, sf4
region c:423-1193
[152980]
2vdc
automatically matched to d1ea0a2
complexed with akg, f3s, fad, fmn, sf4
region d:423-1193
[152983]
2vdc
automatically matched to d1ea0a2
complexed with akg, f3s, fad, fmn, sf4
region e:423-1193
[152986]
2vdc
automatically matched to d1ea0a2
complexed with akg, f3s, fad, fmn, sf4
region f:423-1193
[152989]
Synechocystis sp.
[TaxId: 1143]
[75055] (5)
1ofd
complexed with 2og, f3s, fmn
region a:431-1239
[86936]
region b:431-1239
[86939]
1ofe
complexed with 2og, f3s, fmn, onl
region a:431-1239
[86942]
region b:431-1239
[86945]
1llw
complexed with 2og, f3s, fmn
region a:439-1239
[74018]
1lm1
complexed with act, f3s, fmn
region a:439-1239
[74024]
1llz
complexed with f3s, fmn
region a:439-1239
[74021]
Isopentenyl-diphosphate delta-isomerase [89454]
Bacillus subtilis
[TaxId: 1423]
[89455] (2)
1p0k
complexed with po4
chain a
[87648]
chain b
[87649]
1p0n
complexed with fmn
chain a
[87651]
chain b
[87652]
Thermus thermophilus
[TaxId: 274]
[141760] (6)
SQ
Q53W52
23-332
1vcf
complexed with cd, fmn
region a:23-332
[119974]
1vcf
automatically matched to 1VCF A:23-332
complexed with cd, fmn
region b:23-332
[119975]
1vcg
automatically matched to 1VCF A:23-332
complexed with fmn
region a:23-332
[119976]
1vcg
automatically matched to 1VCF A:23-332
complexed with fmn
region b:23-332
[119977]
1vcg
automatically matched to 1VCF A:23-332
complexed with fmn
region c:23-332
[119978]
1vcg
automatically matched to 1VCF A:23-332
complexed with fmn
region d:23-332
[119979]
Thermus thermophilus HB8
[TaxId: 300852]
[159377] (4)
3dh7
automatically matched to d1vcfa1
complexed with fmn, pop
region a:23-332
[157721]
3dh7
automatically matched to d1vcfa1
complexed with fmn, pop
region b:23-332
[157722]
3dh7
automatically matched to d1vcfa1
complexed with fmn, pop
region c:23-332
[157723]
3dh7
automatically matched to d1vcfa1
complexed with fmn, pop
region d:23-332
[157724]
Putative flavin oxidoreducatase TM0096 [102044]
Dihydrouridine synthase (Dus) homologue; contains extra C-terminal alpha-helical domain
Thermotoga maritima
[TaxId: 2336]
[102045] (1)
1vhn
structural genomics
complexed with fmn, so4
chain a
[100693]
PcrB protein homolog YerE [102046]
provisional classification; it is not known whether this protein binds FMN or not
Bacillus subtilis
[TaxId: 1423]
[102047] (1)
1viz
structural genomics
complexed with na
chain a
[100784]
chain b
[100785]
Hydroxyacid oxidase [141761]
Rat (Rattus norvegicus)
[TaxId: 10116]
[141762] (8)
SQ
Q07523
1-349
1tb3
complexed with acy, fmn
region a:1-349
[119205]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region b:1-349
[119206]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region c:1-349
[119207]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region d:1-349
[119208]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region e:1-349
[119209]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region f:1-349
[119210]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region g:1-349
[119211]
1tb3
automatically matched to 1TB3 A:1-349
complexed with acy, fmn
region h:1-349
[119212]
NADPH dehydrogenase NamA [141763]
OYE homolog
Bacillus subtilis
[TaxId: 1423]
[141764] (8)
SQ
P54550
1-337
probable NADH-dependent flavin oxidoreductase YqjM
1z41
complexed with fmn, so4
region a:2-338
[124421]
1z41
automatically matched to 1Z41 A:2-338
complexed with fmn, so4
region b:2-338
[124422]
1z44
automatically matched to 1Z41 A:2-338
complexed with fmn, npo, so4
region a:2-338
[124425]
1z44
automatically matched to 1Z41 A:2-338
complexed with fmn, npo, so4
region b:2-338
[124426]
1z48
automatically matched to 1Z41 A:2-338
complexed with fmn
region a:2-338
[124429]
1z48
automatically matched to 1Z41 A:2-338
complexed with fmn
region b:2-338
[124430]
1z42
automatically matched to 1Z41 A:2-338
complexed with fmn, hba, so4
region a:2-338
[124423]
1z42
automatically matched to 1Z41 A:2-338
complexed with fmn, hba, so4
region b:2-338
[124424]
(S)-3-O-geranylgeranylglyceryl phosphate synthase [141765]
Archaeon Archaeoglobus fulgidus
[TaxId: 2234]
[141766] (4)
SQ
O29844
1-231
PcrB homolog AF0403
2f6u
complexed with cit
region a:1001-1231
[133061]
2f6u
automatically matched to 2F6U A:1001-1231
complexed with cit
region b:2001-2231
[133062]
2f6x
automatically matched to 2F6U A:1001-1231
complexed with 1gp, mpd
region a:1001-1231
[133065]
2f6x
automatically matched to 2F6U A:1001-1231
complexed with 1gp, mpd
region b:2001-2231
[133066]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk