Structural Classification of Proteins
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Family: alpha-D-glucuronidase/Hyaluronidase catalytic domain

Glycosyl hydrolase family 67, GH67; structurally related to GH20; contains extra C-terminal alpha-helical subdomain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: (Trans)glycosidases [51445]
    link to SUPERFAMILY database - Superfamily
  5. Family: alpha-D-glucuronidase/Hyaluronidase catalytic domain [82253]
    Glycosyl hydrolase family 67, GH67; structurally related to GH20; contains extra C-terminal alpha-helical subdomain

Protein Domains:

  1. alpha-D-glucuronidase catalytic domain [82254]
    inverting reaction mechanism
    1. Pseudomonas cellulosa [TaxId: 155077] [82255] (5)
      1. 1h41 picpicxref
        complexed with co, edo, gcv; mutant
        1. region a:152-712 [83472] picpiclink
        2. region b:152-712 [83474] picpiclink
      2. 1gqi picpicxref
        complexed with co, edo, mg
        1. region a:152-712 [76279] picpiclink
        2. region b:152-712 [76281] picpiclink
      3. 1gql picpicxref
        complexed with bdp, co, edo, xyp
        1. region a:152-705 [76291] picpiclink
        2. region b:152-704 [76293] picpiclink
      4. 1gqk picpicxref
        complexed with bdp, co, edo
        1. region a:152-712 [76287] picpiclink
        2. region b:152-712 [76289] picpiclink
      5. 1gqj picpicxref
        complexed with co, edo, xyp
        1. region a:152-712 [76283] picpiclink
        2. region b:152-712 [76285] picpiclink
    2. Bacillus stearothermophilus [TaxId: 1422] [82256] (7)
      1. 1l8n picpicxref
        complexed with gcw, gol, xyp
        1. region a:143-678 [84564] picpiclink
      2. 1k9d picpicxref
        complexed with gol
        1. region a:143-679 [77292] picpiclink
      3. 1mqq picpicxref
        complexed with gcu, gol
        1. region a:143-678 [91420] picpiclink
      4. 1k9f picpicxref
        complexed with gcv, gol, xyp; mutant
        1. region a:143-679 [77296] picpiclink
      5. 1k9e picpicxref
        complexed with gcv, gol; mutant
        1. region a:143-679 [77294] picpiclink
      6. 1mqp picpicxref
        complexed with gol
        1. region a:143-679 [91418] picpiclink
      7. 1mqr picpicxref
        complexed with gol; mutant
        1. region a:143-679 [91422] picpiclink
  2. Glucosaminidase GH84, catalytic domain [141790]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [141791] (12)
      SQ Q89ZI2 148-457
      1. 2cho picpicxrefxrefxrefxref
        automatically matched to 2CHN A:127-436
        complexed with act, ca, gol
        1. region a:127-436 [130480] picpiclink
      2. 2cho picpicxrefxrefxrefxref
        automatically matched to 2CHN A:127-436
        complexed with act, ca, gol
        1. region b:127-436 [130483] picpiclink
      3. 2vvn picpicxrefxrefxrefxref
        automatically matched to 2J4G A:127-436
        complexed with gol, nh4, nht
        1. region a:127-436 [153635] picpiclink
      4. 2vvn picpicxrefxrefxrefxref
        automatically matched to 2J4G A:127-436
        complexed with gol, nh4, nht
        1. region b:127-436 [153638] picpiclink
      5. 2chn picpicxrefxrefxrefxref
        complexed with ca, gol, ngt
        1. region a:127-436 [130474] picpiclink
      6. 2chn picpicxrefxrefxrefxref
        automatically matched to 2CHN A:127-436
        complexed with ca, gol, ngt
        1. region b:127-436 [130477] picpiclink
      7. 2j47 picpicxrefxref
        complexed with gdv, gol
        1. region a:127-436 [137992] picpiclink
      8. 2jiw picpicxrefxrefxrefxref
        automatically matched to 2J4G A:127-436
        complexed with beu
        1. region a:127-436 [148102] picpiclink
      9. 2jiw picpicxrefxrefxrefxref
        automatically matched to 2J4G A:127-436
        complexed with beu
        1. region b:127-436 [148105] picpiclink
      10. 2j4g picpicxrefxrefxrefxref
        complexed with act, gol, nb1
        1. region a:127-436 [147877] picpiclink
      11. 2j4g picpicxrefxrefxrefxref
        automatically matched to 2J4G A:127-436
        complexed with act, gol, nb1
        1. region b:127-436 [147880] picpiclink
      12. 2vvs picpicxrefxref
        automatically matched to 2J4G A:127-436
        complexed with oan
        1. region a:127-436 [153656] picpiclink
  3. Hyaluronidase catalytic domain [141792]
    1. Clostridium perfringens [TaxId: 1502] [141793] (6)
      SQ Q8XL08 179-495
      1. 2cbi picpicxrefxrefxrefxref
        complexed with cl, gbl, gol, so4, zn
        1. region a:179-495 [130180] picpiclink
      2. 2cbi picpicxrefxrefxrefxref
        automatically matched to 2CBI A:179-495
        complexed with cl, gbl, gol, so4, zn
        1. region b:179-495 [130183] picpiclink
      3. 2j62 picpicxrefxrefxrefxref
        complexed with cl, gsz
        1. region a:179-495 [147890] picpiclink
      4. 2j62 picpicxrefxrefxrefxref
        automatically matched to 2J62 A:179-495
        complexed with cl, gsz
        1. region b:179-495 [147893] picpiclink
      5. 2cbj picpicxrefxrefxrefxref
        automatically matched to 2CBI A:179-495
        complexed with cl, oan
        1. region a:179-495 [130186] picpiclink
      6. 2cbj picpicxrefxrefxrefxref
        automatically matched to 2CBI A:179-495
        complexed with cl, oan
        1. region b:179-495 [130189] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk