Structural Classification of Proteins
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Family: NagZ-like

Pfam 00933; Glycosyl hydrolase family 3 domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: (Trans)glycosidases [51445]
    link to SUPERFAMILY database - Superfamily
  5. Family: NagZ-like [51553]
    Pfam 00933; Glycosyl hydrolase family 3 domain

Protein Domains:

  1. Beta-D-glucan exohydrolase, N-terminal domain [51554]
    interdomain linker forms an additional, N-terminal strand
    1. Barley (Hordeum vulgare) [TaxId: 4513] [51555] (9)
      1. 1x38 picpicxref
        automatically matched to d1ex1a1
        complexed with bma, fuc, gol, idd, man, nag, so4, xyp
        1. region a:1-388 [121655] picpiclink
      2. 1x39 picpicxref
        automatically matched to d1ex1a1
        complexed with bma, fuc, gol, ide, man, nag, so4, xyp
        1. region a:1-388 [121657] picpiclink
      3. 1iex picpicxref
        complexed with fuc, man, nag, tcb
        1. region a:1-388 [66127] picpiclink
      4. 1ex1 picpicxref
        1. region a:1-388 [29013] picpiclink
      5. 1j8v picpicxref
        complexed with fuc, lam, man, nag
        1. region a:1-388 [71612] picpiclink
      6. 1iew picpicxref
        complexed with fuc, g2f, man, nag
        1. region a:1-388 [66125] picpiclink
      7. 1ieq picpicxref
        complexed with fuc, glc, man, nag
        1. region a:1-388 [66121] picpiclink
      8. 1lq2 picpicxref
        complexed with fuc, gol, idd, man, nag
        1. region a:1-388 [91099] picpiclink
      9. 1iev picpicxref
        complexed with fuc, ins, man, nag
        1. region a:1-388 [66123] picpiclink
  2. Beta-hexosaminidase NagZ [117370]
    1. Vibrio cholerae [TaxId: 666] [117371] (2)
      SQ Q9KU37
      1. 1tr9 picpic
        1. chain a [112617] picpiclink
      2. 1y65 picpic
        complexed with nag
        1. chain a [116495] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk