Structural Classification of Proteins
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Superfamily: Ribokinase-like

has extra strand located between strands 2 and 3
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribokinase-like [53612]
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. Superfamily: Ribokinase-like [53613]
    has extra strand located between strands 2 and 3
    link to SUPERFAMILY database - Superfamily

Families:

  1. Thiamin biosynthesis kinases [53620] (4)
    1. Hydroxyethylthiazole kinase (THZ kinase, ThiK) [53621]
      1. Bacillus subtilis [TaxId: 1423] [53622] (5) picpic
      2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102637] (1) picpic
    2. 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) [69589]
      1. Salmonella typhimurium [TaxId: 90371] [69590] (2) picpic
      2. Thermus thermophilus [TaxId: 274] [89775] (1) picpic
  2. YjeF C-terminal domain-like [75292] (2)
    1. Hypothetical protein YxkO [75293]
      1. Bacillus subtilis [TaxId: 1423] [75294] (1) picpic
    2. Hypothetical protein TM0922, C-terminal domain [142707]
      YjeF homolog
      1. Thermotoga maritima [TaxId: 2336] [142708] (1) picpic
        SQ Q9X024 212-489
  3. PfkB-like kinase [82515] (2)
    includes a variety of carbohydrate and pyrimidine kinases
    1. Pyridoxal kinase [82516]
      1. Sheep (Ovis aries) [TaxId: 9940] [82517] (8) picpic
    2. Pyridoxamine kinase [102638]
      1. Escherichia coli [TaxId: 562] [102639] (2) picpic
        SQ P77150
  4. Ribokinase-like [53614] (13)
    1. Ribokinase [53615]
      1. Escherichia coli [TaxId: 562] [53616] (5) picpic
      2. Thermotoga maritima [TaxId: 2336] [110706] (1) picpic
        SQ Q9X055
      3. Human (Homo sapiens) [TaxId: 9606] [142709] (2) picpic
        SQ Q9H477 15-322
    2. 2-keto-3-deoxygluconate kinase [75295]
      1. Thermotoga maritima, TM0067 [TaxId: 2336] [75296] (2) picpic
      2. Thermus thermophilus [TaxId: 274] [102640] (4) picpic
    3. Hypothetical protein TM0415 [102641]
      1. Thermotoga maritima [TaxId: 2336] [102642] (1) picpic
    4. Putative sugar kinase TM0828 [82518]
      1. Thermotoga maritima [TaxId: 2336] [82519] (2) picpic
    5. Adenosine kinase [53617]
      1. Human (Homo sapiens) [TaxId: 9606] [53618] (5) picpic
      2. Toxoplasma gondii [TaxId: 5811] [53619] (10) picpic
    6. Aminoimidazole riboside kinase [117720]
      1. Salmonella typhimurium [TaxId: 90371] [117721] (3) picpic
        SQ Q8ZKR2
    7. Tagatose-6-phosphate kinase LacC [142710]
      1. Enterococcus faecalis [TaxId: 1351] [142711] (4) picpic
        SQ Q833W9 1-313
    8. Fructose 1-phosphate kinase FruB [142712]
      1. Bacillus halodurans [TaxId: 86665] [142713] (2) picpic
        SQ Q9KEM5 1-306
    9. Hypothetical fructokinase ST2478 [142714]
      1. Sulfolobus tokodaii [TaxId: 111955] [142715] (18) picpic
        SQ Q96XN9 2-309
  5. ADP-specific Phosphofructokinase/Glucokinase [64147] (3)
    Pfam 04587
    1. ADP-dependent glucokinase [64148]
      1. Archaeon Thermococcus litoralis [TaxId: 2265] [64149] (2) picpic
      2. Archaeon Pyrococcus furiosus [TaxId: 2261] [102643] (1) picpic
    2. ADP-specific phosphofructokinase [110707]
      1. Pyrococcus horikoshii [TaxId: 53953] [110708] (1) picpic
        SQ O59355 # PH1645
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk