Structural Classification of Proteins
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Family: Amidase signature (AS) enzymes

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Amidase signature (AS) enzymes [75303]
    possible duplication: the topologies of N- and C-terminal halves are similar; 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213549A867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. Superfamily: Amidase signature (AS) enzymes [75304]
    link to SUPERFAMILY database - Superfamily
  5. Family: Amidase signature (AS) enzymes [75305]

Protein Domains:

  1. Malonamidase E2 [75306]
    1. Bradyrhizobium japonicum [TaxId: 375] [75307] (12)
      1. 1ock picpic
        1. chain a [86802] picpiclink
        2. chain b [86803] picpiclink
      2. 1o9p picpic
        complexed with mla; mutant
        1. chain a [92681] picpiclink
        2. chain b [92682] picpiclink
      3. 1o9q picpic
        mutant
        1. chain a [92683] picpiclink
        2. chain b [92684] picpiclink
      4. 1och picpic
        mutant
        1. chain a [92774] picpiclink
        2. chain b [92775] picpiclink
      5. 1obj picpic
        mutant
        1. chain a [92757] picpiclink
        2. chain b [92758] picpiclink
      6. 1ocm picpic
        complexed with pop
        1. chain a [86806] picpiclink
        2. chain b [86807] picpiclink
      7. 1o9n picpic
        mutant
        1. chain a [92677] picpiclink
        2. chain b [92678] picpiclink
      8. 1obl picpic
        complexed with mla; mutant
        1. chain a [92761] picpiclink
        2. chain b [92762] picpiclink
      9. 1ocl picpic
        complexed with mla
        1. chain a [86804] picpiclink
        2. chain b [86805] picpiclink
      10. 1obk picpic
        mutant
        1. chain a [92759] picpiclink
        2. chain b [92760] picpiclink
      11. 1obi picpic
        mutant
        1. chain a [92755] picpiclink
        2. chain b [92756] picpiclink
      12. 1o9o picpic
        complexed with mlm; mutant
        1. chain a [92679] picpiclink
        2. chain b [92680] picpiclink
  2. Peptide amidase Pam [82529]
    1. Stenotrophomonas maltophilia [TaxId: 40324] [82530] (2)
      1. 1m22 picpic
        complexed with epe
        1. chain a [78464] picpiclink
        2. chain b [78465] picpiclink
      2. 1m21 picpic
        complexed with chy
        1. chain a [78462] picpiclink
        2. chain b [78463] picpiclink
  3. Fatty acid amide hydrolase (oleamide hydrolase) [82531]
    elaborated fold with additional helices
    1. Rat (Rattus norvegicus) [TaxId: 10116] [82532] (1)
      1. 1mt5 picpic
        complexed with may
        1. chain a [79430] picpiclink
        2. chain b [79431] picpiclink
        3. chain c [79432] picpiclink
        4. chain d [79433] picpiclink
        5. chain e [79434] picpiclink
        6. chain f [79435] picpiclink
        7. chain g [79436] picpiclink
        8. chain h [79437] picpiclink
        9. chain i [79438] picpiclink
        10. chain j [79439] picpiclink
        11. chain k [79440] picpiclink
        12. chain l [79441] picpiclink
        13. chain m [79442] picpiclink
        14. chain n [79443] picpiclink
        15. chain o [79444] picpiclink
        16. chain p [79445] picpiclink
  4. Glutamyl-tRNA(Gln) amidotransferase subunit A [142738]
    1. Staphylococcus aureus [TaxId: 1280] [142739] (5)
      SQ P63488 1-485
      1. 2f2a picpicxrefxrefxref
        automatically matched to 2DF4 A:1-485
        complexed with gln, mg
        1. region a:1-485 [132801] picpiclink
      2. 2g5h picpicxrefxrefxref
        automatically matched to 2DF4 A:1-485
        complexed with mg
        1. region a:1-485 [134658] picpiclink
      3. 2dqn picpicxrefxrefxref
        automatically matched to 2DF4 A:1-485
        complexed with asn, mg
        1. region a:1-485 [131639] picpiclink
      4. 2df4 picpicxrefxrefxref
        complexed with mn
        1. region a:1-485 [131445] picpiclink
      5. 2g5i picpicxrefxrefxref
        automatically matched to 2DF4 A:1-485
        complexed with adp, mg
        1. region a:1-485 [134662] picpiclink
    2. Thermotoga maritima [TaxId: 2336] [142740] (1)
      SQ Q9X0Z9 1-475
      1. 2gi3 picpic
        complexed with act, mpd
        1. region a:1-475 [135220] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk