Structural Classification of Proteins

Family: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685]
consists of two similar domains related by pseudo dyad; duplication
core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
Superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686]
uperfamily
Family: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687]

Protein Domains:

Tryptophan synthase, beta-subunit [53688]
1. Salmonella typhimurium [TaxId: 90371] [53689] (47)
  1. 1qop
    complexed with ipl, na, plp
    1. chain b [35270]
  2. 1tjp
    automatically matched to d1k3ub_
    complexed with hpf, na, plp
    1. region b:2-395 [119291]
  3. 1wbj
    automatically matched to d1k3ub_
    complexed with g3p, na, plp
    1. region b:2-391 [120849]
  4. 2clk
    automatically matched to d1k3ub_
    complexed with g3h, na, plp
    1. region b:2-391 [130579]
  5. 1k8y
    complexed with g3p, na, plp; mutant
    1. chain b [72184]
  6. 1kfc
    complexed with ipl, na, plp; mutant
    1. chain b [77372]
  7. 2cle
    automatically matched to d1bksb_
    complexed with f6f, na, plp
    1. region b:3-394 [130573]
  8. 2clm
    automatically matched to d1bksb_
    complexed with f6f, na, pls
    1. region b:3-394 [130583]
  9. 1k3u
    complexed with iad, na, plp
    1. chain b [72031]
  10. 2clo
    automatically matched to d1bksb_
    complexed with f19, na, pls
    1. region b:3-392 [130585]
  11. 2clf
    automatically matched to d1bksb_
    complexed with f6f, na, plp
    1. region b:3-394 [146413]
  12. 2rh9
    automatically matched to d1k3ub_
    complexed with igp, na, plp
    1. region b:2-395 [152035]
  13. 2cli
    automatically matched to d1k3ub_
    complexed with f9f, na, plp
    1. region b:2-395 [130577]
  14. 1qoq
    complexed with igp, plp
    1. chain b [35271]
  15. 2cll
    automatically matched to d1k3ub_
    complexed with f9f, na, pls
    1. region b:2-395 [130581]
  16. 2clh
    automatically matched to d1bksb_
    complexed with f19, na, plp
    1. region b:3-394 [130575]
  17. 1kfe
    complexed with na, pls; mutant
    1. chain b [77374]
  18. 1kfb
    complexed with igp, plp; mutant
    1. chain b [77370]
  19. 1k7x
    complexed with na, plp; mutant
    1. chain b [72135]
  20. 1kfj
    complexed with na, pls
    1. chain b [90959]
  21. 1k8x
    complexed with na, plp; mutant
    1. chain b [77289]
  22. 1k8z
    complexed with iag, na, plp; mutant
    1. chain b [72186]
  23. 2tys
    complexed with na, plt; mutant
    1. chain b [35272]
  24. 2rhg
    automatically matched to d1k3ub_
    complexed with igp, na, plp
    1. region b:2-391 [152051]
  25. 2j9x
    automatically matched to d1k3ub_
    complexed with cs, dms, g3p, p1t
    1. region b:2-395 [147947]
  26. 1k7f
    complexed with iav, plp
    1. chain b [72100]
  27. 3cep
    automatically matched to d1k3ub_
    complexed with cs, g3h, idm, plp, sri
    1. region b:2-394 [156533]
  28. 1beu
    complexed with ipl, k, pls; mutant
    1. chain b [35274]
  29. 1ubs
    complexed with na, plp; mutant
    1. chain b [35273]
  30. 1a5b
    complexed with igp, k, plp; mutant
    1. chain b [35275]
  31. 1a5a
    complexed with k, plp; mutant
    1. chain b [35276]
  32. 1kfk
    complexed with na, plp
    1. chain b [90961]
  33. 1ttq
    complexed with k p, plp
    1. chain b [35268]
  34. 1k7e
    complexed with iag, na, plp
    1. chain b [72098]
  35. 1fuy
    complexed with fip, na, plp; mutant
    1. chain b [35279]
  36. 1a50
    complexed with fip, na, plp
    1. chain b [35280]
  37. 2trs
    complexed with ipl, na, pls; mutant
    1. chain b [35277]
  38. 1cw2
    1. chain b [35278]
  39. 1a5s
    complexed with fip, na, plp
    1. chain b [35281]
  40. 1c8v
    1. chain b [35282]
  41. 1bks
    complexed with na, plp
    1. chain b [35285]
  42. 1ttp
    complexed with cs, plp
    1. chain b [35269]
  43. 2tsy
    complexed with g3p, na, pls; mutant
    1. chain b [35283]
  44. 1cx9
    1. chain b [35284]
  45. 1c9d
    1. chain b [35286]
  46. 1c29
    1. chain b [35287]
  47. 2wsy
    complexed with na, plp
    1. chain b [35288]
2. Archaeon Pyrococcus furiosus [TaxId: 2261] [142741] (10)
  SQ Q8U093 1-386
  1. 1v8z
    complexed with na, plp
    1. region a:1-386 [119873]
  2. 1v8z
    automatically matched to 1V8Z A:1-386
    complexed with na, plp
    1. region b:1-386 [119874]
  3. 1v8z
    automatically matched to 1V8Z A:1-386
    complexed with na, plp
    1. region c:1-386 [119875]
  4. 1v8z
    automatically matched to 1V8Z A:1-386
    complexed with na, plp
    1. region d:1-386 [119876]
  5. 1wdw
    automatically matched to 1V8Z A:1-386
    complexed with plp
    1. region b:1-385 [120917]
  6. 1wdw
    automatically matched to 1V8Z A:1-386
    complexed with plp
    1. region d:1-385 [120919]
  7. 1wdw
    automatically matched to 1V8Z A:1-386
    complexed with plp
    1. region f:1-385 [120921]
  8. 1wdw
    automatically matched to 1V8Z A:1-386
    complexed with plp
    1. region h:1-385 [120923]
  9. 1wdw
    automatically matched to 1V8Z A:1-386
    complexed with plp
    1. region j:1-385 [120925]
  10. 1wdw
    automatically matched to 1V8Z A:1-386
    complexed with plp
    1. region l:1-385 [120927]
O-acetylserine sulfhydrylase (Cysteine synthase) [53690]
1. Salmonella typhimurium [TaxId: 90371] [53691] (3)
  1. 1fcj
    complexed with cl, plp, so4
    1. chain a [35289]
    2. chain b [35290]
    3. chain c [35291]
    4. chain d [35292]
  2. 1oas
    1. chain a [35293]
    2. chain b [35294]
  3. 1d6s
    complexed with met, plp; mutant
    1. chain a [35295]
    2. chain b [35296]
2. Thermotoga maritima [TaxId: 2336] [75312] (1)
  TM0665
  1. 1o58
    structural genomics
    complexed with po4
    1. chain a [92491]
    2. chain b [92492]
    3. chain c [92493]
    4. chain d [92494]
3. Archaeon Aeropyrum pernix [TaxId: 56636] [142742] (2)
  SQ Q9YBL2 1-382
  1. 1wkv
    complexed with act, plp
    1. region a:2-383 [120989]
  2. 1wkv
    automatically matched to 1WKV A:2-383
    complexed with act, plp
    1. region b:2-383 [120990]
4. Thermus thermophilus [TaxId: 274] [142743] (5)
  SQ Q5SLE6 1-302
  1. 1ve1
    complexed with plp
    1. region a:1-302 [120007]
  2. 2ecq
    automatically matched to d1ve1a1
    complexed with 3hl, plp
    1. region a:1-302 [146791]
  3. 2eco
    automatically matched to d1ve1a1
    complexed with 4mv, plp
    1. region a:1-302 [146790]
  4. 2efy
    automatically matched to d1ve1a1
    complexed with 4at, plp
    1. region a:1-302 [146824]
  5. 2efy
    automatically matched to d1ve1a1
    complexed with 4at, plp
    1. region b:1-302 [146825]
5. Escherichia coli, isoform B (CysM) [TaxId: 562] [142744] (8)
  SQ P16703 2-293
  1. 2bhs
    complexed with plp
    1. region a:2-293 [128546]
  2. 2bhs
    automatically matched to 2BHS A:2-293
    complexed with plp
    1. region b:2-292 [128547]
  3. 2bhs
    automatically matched to 2BHS A:2-293
    complexed with plp
    1. region c:2-292 [128548]
  4. 2bhs
    automatically matched to 2BHS A:2-293
    complexed with plp
    1. region d:2-292 [128549]
  5. 2bht
    mutant
    1. region a:2-293 [128550]
  6. 2bht
    automatically matched to 2BHT A:2-293
    mutant
    1. region b:2-293 [128551]
  7. 2bht
    automatically matched to 2BHT A:2-293
    mutant
    1. region c:2-292 [128552]
  8. 2bht
    automatically matched to 2BHT A:2-293
    mutant
    1. region d:2-293 [128553]
6. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [142745] (2)
  SQ P47998 3-322
  1. 1z7w
    complexed with plp, so4
    1. region a:3-322 [124674]
  2. 1z7y
    complexed with aa5; mutant
    1. region a:3-322 [124679]
7. Haemophilus influenzae [TaxId: 727] [142746] (1)
  SQ P45040 2-311
  1. 1y7l
    complexed with so4
    1. region a:2-311 [122695]
Threonine deaminase [53692]
1. Escherichia coli [TaxId: 562] [53693] (1)
  1. 1tdj
    CASP2
    complexed with plp
    1. region a:5-335 [35297]
2. Thermus thermophilus [TaxId: 274] [142747] (4)
  SQ Q5SLL4 2-311
  1. 1ve5
    complexed with ca, plp
    1. region a:2-311 [120013]
  2. 1ve5
    automatically matched to 1VE5 A:2-311
    complexed with ca, plp
    1. region b:2-311 [120014]
  3. 1ve5
    automatically matched to 1VE5 A:2-311
    complexed with ca, plp
    1. region c:2-311 [120015]
  4. 1ve5
    automatically matched to 1VE5 A:2-311
    complexed with ca, plp
    1. region d:2-311 [120016]
Threonine synthase [64172]
1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [64173] (1)
  1. 1e5x
    complexed with mso
    1. chain a [59283]
    2. chain b [59284]
2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [75313] (1)
  1. 1kl7
    complexed with mse, plp
    1. chain a [72678]
    2. chain b [72679]
3. Thermus thermophilus [TaxId: 274] [102667] (3)
  1. 1v7c
    complexed with hey
    1. chain a [100446]
    2. chain b [100447]
    3. chain c [100448]
    4. chain d [100449]
  2. 1uim
    complexed with plp
    1. chain a [99425]
    2. chain b [99426]
  3. 1uin
    complexed with plp, so4
    1. chain a [99427]
    2. chain b [99428]
4. Escherichia coli [TaxId: 562] [142748] (1)
  SQ P00934 1-428
  1. 1vb3
    complexed with kpa, so4
    1. region a:1-428 [119942]
L-serine dehydratase [102668]
1. Rat (Rattus norvegicus) [TaxId: 10116] [102669] (2)
  1. 1pwh
    complexed with k, plv
    1. chain a [95224]
    2. chain b [95225]
    3. chain c [95226]
    4. chain d [95227]
  2. 1pwe
    1. chain a [95218]
    2. chain b [95219]
    3. chain c [95220]
    4. chain d [95221]
    5. chain e [95222]
    6. chain f [95223]
2. Human (Homo sapiens) [TaxId: 9606] [110721] (1)
  SQ P20132
  1. 1p5j
    complexed with plp; mutant
    1. chain a [104067]
1-aminocyclopropane-1-carboxylate deaminase [53694]
1. Yeast (Hansenula saturnus) [TaxId: 4906] [53695] (4)
  1. 1f2d
    complexed with plp, so4
    1. chain a [35298]
    2. chain b [35299]
    3. chain c [35300]
    4. chain d [35301]
  2. 1j0d
    complexed with 5pa; mutant
    1. chain a [83902]
    2. chain b [83903]
    3. chain c [83904]
    4. chain d [83905]
  3. 1j0e
    complexed with 1ac, plp; mutant
    1. chain a [83906]
    2. chain b [83907]
    3. chain c [83908]
    4. chain d [83909]
  4. 1j0c
    complexed with plp; mutant
    1. chain a [83898]
    2. chain b [83899]
    3. chain c [83900]
    4. chain d [83901]
2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [89777] (2)
  1. 1j0a
    complexed with ioh, plp, so4
    1. chain a [83871]
    2. chain b [83872]
    3. chain c [83873]
  2. 1j0b
    complexed with 5pa
    1. chain a [83874]
    2. chain b [83875]
    3. chain c [83876]
    4. chain d [83877]
    5. chain e [83878]
    6. chain f [83879]
    7. chain g [83880]
    8. chain h [83881]
    9. chain i [83882]
    10. chain j [83883]
    11. chain k [83884]
    12. chain l [83885]
    13. chain m [83886]
    14. chain n [83887]
    15. chain o [83888]
    16. chain p [83889]
    17. chain q [83890]
    18. chain r [83891]
    19. chain s [83892]
    20. chain t [83893]
    21. chain u [83894]
    22. chain v [83895]
    23. chain w [83896]
    24. chain x [83897]
3. Pseudomonas sp., strain ACP [TaxId: 306] [110722] (6)
  SQ Q00740
  1. 1tyz
    complexed with plp, so4
    1. chain a [112852]
    2. chain b [112853]
    3. chain c [112854]
    4. chain d [112855]
  2. 1tzj
    complexed with a3b, plp, so4
    1. chain a [112868]
    2. chain b [112869]
    3. chain c [112870]
    4. chain d [112871]
  3. 1tzk
    complexed with 2kt, plp, so4
    1. chain a [112872]
    2. chain b [112873]
    3. chain c [112874]
    4. chain d [112875]
  4. 1tz2
    complexed with 1ac, plp
    1. chain a [112856]
    2. chain b [112857]
    3. chain c [112858]
    4. chain d [112859]
  5. 1tzm
    complexed with c2n, nak, plp, so4
    1. chain a [112892]
    2. chain b [112893]
    3. chain c [112894]
    4. chain d [112895]
  6. 1rqx
    complexed with mlp, plp
    1. chain a [105069]
    2. chain b [105070]
    3. chain c [105071]
    4. chain d [105072]
Cystathionine beta-synthase [64174]
PLP-dependent hemoprotein
1. Human (Homo sapiens) [TaxId: 9606] [64175] (2)
  1. 1jbq
    complexed with hem, plp; mutant
    1. chain a [62850]
    2. chain b [62851]
    3. chain c [62852]
    4. chain d [62853]
    5. chain e [62854]
    6. chain f [62855]
  2. 1m54
    complexed with hem, plp; mutant
    1. chain a [74463]
    2. chain b [74464]
    3. chain c [74465]
    4. chain d [74466]
    5. chain e [74467]
    6. chain f [74468]
Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) [142749]
1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [142750] (2)
  SQ O59791 6-323
  1. 1v71
    complexed with mg, plp
    1. region a:6-323 [119859]
  2. 1wtc
    automatically matched to 1V71 A:6-323
    complexed with acp, mg, plp
    1. region a:6-323 [121257]