Structural Classification of Proteins
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Fold: DAK1/DegV-like

2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: DAK1/DegV-like [82548]
    2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]

Superfamilies:

  1. DAK1/DegV-like [82549] (2)
    domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different
    link to SUPERFAMILY database - Superfamily
    1. DegV-like [82550] (2)
      Pfam 02645, DUF194
      1. Hypothetical protein TM841 [82551]
        reveals fatty acid binding function
        1. Thermotoga maritima [TaxId: 2336] [82552] (2)
          SQ Q9X1H9
          1. 1mgp picpic
            structural genomics
            complexed with mse, plm
            1. chain a [79098] picpiclink
          2. 1vpv picpic
            Structural genomics target
            complexed with plm, po4
            1. chain a [113975] picpiclink
            2. chain b [113976] picpiclink
      2. Hypothetical protein apc36103 [102686]
        lipid-binding protein; Bacilus subtilis YitS ortholog
        1. Bacillus stearothermophilus [TaxId: 1422] [102687] (1)
          1. 1pzx picpic
            structural genomics
            complexed with plm
            1. chain a [95484] picpiclink
            2. chain b [95485] picpiclink
    2. DAK1 [109613] (2)
      Pfam 02733
      1. Dihydroxyacetone kinase subunit K, DhaK [109614]
        1. Escherichia coli [TaxId: 562] [109615] (4)
          SQ P76015 20-366
          gene product YcgT
          1. 1oi2 picpic
            complexed with gol, so4
            1. chain a [103802] picpiclink
            2. chain b [103803] picpiclink
          2. 1uod picpic
            complexed with g3h, so4
            1. chain a [107970] picpiclink
            2. chain b [107971] picpiclink
          3. 1uoe picpic
            complexed with gol, so4
            1. chain a [107972] picpiclink
            2. chain b [107973] picpiclink
          4. 1oi3 picpic
            complexed with so4
            1. chain a [103804] picpiclink
            2. chain b [103805] picpiclink
      2. Dihydroxyacetone kinase [109616]
        contains additional alpha-helical, ATP-binding domain
        1. Citrobacter freundii [TaxId: 546] [109617] (2)
          1. 1un8 picpicxref
            complexed with myy
            1. region a:1-335 [103806] picpiclink
            2. region b:1-335 [103807] picpiclink
          2. 1un9 picpicxref
            complexed with 2ha, anp, mg
            1. region a:1-335 [103808] picpiclink
            2. region b:1-335 [103809] picpiclink

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site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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