Superfamily: DAK1/DegV-like

domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different
uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: DAK1/DegV-like [82548]
   2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]
4. Superfamily: DAK1/DegV-like [82549]
   domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different
   uperfamily

Families:

1. DegV-like [82550] (2)
   Pfam 02645, DUF194
   1. Hypothetical protein TM841 [82551]
      reveals fatty acid binding function
      1. Thermotoga maritima [TaxId: 2336] [82552] (2)
         SQ Q9X1H9
         1. 1mgp
            structural genomics
            complexed with mse, plm
            1. chain a [79098]
         2. 1vpv
            Structural genomics target
            complexed with plm, po4
            1. chain a [113975]
            2. chain b [113976]
   2. Hypothetical protein apc36103 [102686]
      lipid-binding protein; Bacilus subtilis YitS ortholog
      1. Bacillus stearothermophilus [TaxId: 1422] [102687] (1)
         1. 1pzx
            structural genomics
            complexed with plm
            1. chain a [95484]
            2. chain b [95485]
2. DAK1 [109613] (2)
   Pfam 02733
   1. Dihydroxyacetone kinase subunit K, DhaK [109614]
      1. Escherichia coli [TaxId: 562] [109615] (4)
         SQ P76015 20-366
         gene product YcgT
         1. 1oi2
            complexed with gol, so4
            1. chain a [103802]
            2. chain b [103803]
         2. 1uod
            complexed with g3h, so4
            1. chain a [107970]
            2. chain b [107971]
         3. 1uoe
            complexed with gol, so4
            1. chain a [107972]
            2. chain b [107973]
         4. 1oi3
            complexed with so4
            1. chain a [103804]
            2. chain b [103805]
   2. Dihydroxyacetone kinase [109616]
      contains additional alpha-helical, ATP-binding domain
      1. Citrobacter freundii [TaxId: 546] [109617] (2)
         1. 1un8
            complexed with myy
            1. region a:1-335 [103806]
            2. region b:1-335 [103807]
         2. 1un9
            complexed with 2ha, anp, mg
            1. region a:1-335 [103808]
            2. region b:1-335 [103809]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk