Structural Classification of Proteins

Fold: ClpP/crotonase

: core: 4 turns of (beta-beta-alpha)n superhelix

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: ClpP/crotonase [52095]
core: 4 turns of (beta-beta-alpha)n superhelix

Superfamilies:

ClpP/crotonase [52096] (4)
uperfamily
1. Clp protease, ClpP subunit [52097] (5)
  1. Clp protease, ClpP subunit [52098]
    1. Escherichia coli [TaxId: 562] [52099] (55)
    2. Human (Homo sapiens), mitochondrial [TaxId: 9606] [141995] (7)
      SQ Q16740 57-249
    3. Plasmodium falciparum [TaxId: 5833] [141996] (7)
      SQ O97252 177-366
    4. Mycobacterium tuberculosis [TaxId: 1773] [141997] (21)
      SQ P0A526 15-193
    5. Streptococcus pneumoniae [TaxId: 1313] [141998] (7)
      SQ P63788 2-193
2. Tail specific protease, catalytic domain [52100] (3)
  includes N-terminal all-alpha subdomain
  1. Photosystem II D1 C-terminal processing protease [68935]
    1. Algae (Scenedesmus obliquus) [TaxId: 3088] [52102] (4)
  2. Tricorn protease [69436]
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [69437] (4)
  3. Interphotoreceptor retinoid-binding protein IRBP [69438]
    very similar to the tail-specific protease domain; lacks the PDZ insertion domain and hydrolytic activity
    1. African clawed frog (Xenopus laevis) [TaxId: 8355] [69439] (1)
3. Crotonase-like [52103] (17)
  1. 4-Chlorobenzoyl-CoA dehalogenase [52104]
    1. Pseudomonas sp., strain CBS-3 [TaxId: 306] [52105] (2)
  2. Enoyl-CoA hydratase (crotonase) [52106]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [52107] (4)
    2. Thermus thermophilus [TaxId: 274] [102207] (1)
  3. Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) [52108]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [52109] (1)
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [63954] (4)
    3. Rat (Rattus norvegicus), mitochondrial [TaxId: 10116] [117465] (1)
      SQ P23965
    4. Human (Homo sapiens), mitochondrial [TaxId: 9606] [141999] (3)
      SQ P42126 44-292
  4. Naphthoate synthase MenB [102208]
    1. Mycobacterium tuberculosis [TaxId: 1773] [102209] (4)
      SQ O06414 18-285
  5. AUH protein [69440]
    an RNA-binding homologue of enoyl-CoA hydratase
    1. Human (Homo sapiens) [TaxId: 9606] [69441] (1)
  6. Methylmalonyl CoA decarboxylase [52110]
    1. Escherichia coli [TaxId: 562] [52111] (2)
  7. 6-oxo camphor hydrolase [82331]
    1. Rhodococcus erythropolis [TaxId: 1833] [82332] (2)
      SQ Q93TU6
  8. Fatty oxidation complex alpha subunit, N-terminal domain [110450]
    1. Pseudomonas fragi [TaxId: 296] [110451] (4)
      SQ P28793
  9. Probable enoyl-CoA hydratase TTHA0218 [142000]
    1. Thermus thermophilus [TaxId: 274] [142001] (6)
      SQ Q5SLS5 2-264
  10. Chromodomain protein CDY2A [142002]
    1. Human (Homo sapiens) [TaxId: 9606] [142003] (6)
      SQ Q9Y6F7 284-541
  11. Carbapenem biosynthes protein CarB [142004]
    1. Pectobacterium carotovorum [TaxId: 554] [142005] (12)
      SQ Q9XB60 1-230
  12. Peroxisomal 3,2-trans-enoyl-CoA isomerase [142006]
    1. Human (Homo sapiens) [TaxId: 9606] [142007] (3)
      SQ O75521 103-347
  13. Chromodomain protein CDY1, C-terminal domain [142008]
    1. Human (Homo sapiens) [TaxId: 9606] [142009] (3)
      SQ Q9Y6F8 282-532
4. Biotin dependent carboxylase carboxyltransferase domain [89572] (8)
  Pfam 01039
  the active site is formed by two different homologous subunits or domains of this fold
  1. Acetyl-coenzyme A carboxylase [89573]
    duplication: consists of two similar structural domains forming a functional domain of a larger multifunctional enzyme
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89574] (7)
      SQ Q00955 1482-2196
  2. Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) [89575]
    1. Propionibacterium freudenreichii [TaxId: 1744] [89576] (2)
  3. Glutaconyl-CoA decarboxylase A subunit [102210]
    1. Acidaminococcus fermentans [TaxId: 905] [102211] (1)
  4. Propionyl-CoA carboxylase complex B subunit, PccB [117466]
    1. Streptomyces coelicolor [TaxId: 1902] [117467] (4)
      SQ Q9X4K7
    2. Mycobacterium tuberculosis [TaxId: 1773] [142010] (12)
      SQ P96885 20-277! SQ P96885 278-548
    3. Thermotoga maritima [TaxId: 2336] [142011] (12)
      SQ Q9WZH5 1-251! SQ Q9WZH5 252-515
  5. Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA [142012]
    1. Escherichia coli [TaxId: 562] [142013] (1)
      SQ P0ABD5 4-319
  6. Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD [142014]
    1. Escherichia coli [TaxId: 562] [142015] (1)
      SQ P0A9Q6 23-285