Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: ClpP/crotonase

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: ClpP/crotonase [52095]
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. Superfamily: ClpP/crotonase [52096]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Clp protease, ClpP subunit [52097] (5)
    1. Clp protease, ClpP subunit [52098]
      1. Escherichia coli [TaxId: 562] [52099] (55) picpic
      2. Human (Homo sapiens), mitochondrial [TaxId: 9606] [141995] (7) picpic
        SQ Q16740 57-249
      3. Plasmodium falciparum [TaxId: 5833] [141996] (7) picpic
        SQ O97252 177-366
      4. Mycobacterium tuberculosis [TaxId: 1773] [141997] (21) picpic
        SQ P0A526 15-193
      5. Streptococcus pneumoniae [TaxId: 1313] [141998] (7) picpic
        SQ P63788 2-193
  2. Tail specific protease, catalytic domain [52100] (3)
    includes N-terminal all-alpha subdomain
    1. Photosystem II D1 C-terminal processing protease [68935]
      1. Algae (Scenedesmus obliquus) [TaxId: 3088] [52102] (4) picpic
    2. Tricorn protease [69436]
      1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [69437] (4) picpic
    3. Interphotoreceptor retinoid-binding protein IRBP [69438]
      very similar to the tail-specific protease domain; lacks the PDZ insertion domain and hydrolytic activity
      1. African clawed frog (Xenopus laevis) [TaxId: 8355] [69439] (1) picpic
  3. Crotonase-like [52103] (17)
    1. 4-Chlorobenzoyl-CoA dehalogenase [52104]
      1. Pseudomonas sp., strain CBS-3 [TaxId: 306] [52105] (2) picpic
    2. Enoyl-CoA hydratase (crotonase) [52106]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [52107] (4) picpic
      2. Thermus thermophilus [TaxId: 274] [102207] (1) picpic
    3. Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) [52108]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [52109] (1) picpic
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [63954] (4) picpic
      3. Rat (Rattus norvegicus), mitochondrial [TaxId: 10116] [117465] (1) picpic
        SQ P23965
      4. Human (Homo sapiens), mitochondrial [TaxId: 9606] [141999] (3) picpic
        SQ P42126 44-292
    4. Naphthoate synthase MenB [102208]
      1. Mycobacterium tuberculosis [TaxId: 1773] [102209] (4) picpic
        SQ O06414 18-285
    5. AUH protein [69440]
      an RNA-binding homologue of enoyl-CoA hydratase
      1. Human (Homo sapiens) [TaxId: 9606] [69441] (1) picpic
    6. Methylmalonyl CoA decarboxylase [52110]
      1. Escherichia coli [TaxId: 562] [52111] (2) picpic
    7. 6-oxo camphor hydrolase [82331]
      1. Rhodococcus erythropolis [TaxId: 1833] [82332] (2) picpic
        SQ Q93TU6
    8. Fatty oxidation complex alpha subunit, N-terminal domain [110450]
      1. Pseudomonas fragi [TaxId: 296] [110451] (4) picpic
        SQ P28793
    9. Probable enoyl-CoA hydratase TTHA0218 [142000]
      1. Thermus thermophilus [TaxId: 274] [142001] (6) picpic
        SQ Q5SLS5 2-264
    10. Chromodomain protein CDY2A [142002]
      1. Human (Homo sapiens) [TaxId: 9606] [142003] (6) picpic
        SQ Q9Y6F7 284-541
    11. Carbapenem biosynthes protein CarB [142004]
      1. Pectobacterium carotovorum [TaxId: 554] [142005] (12) picpic
        SQ Q9XB60 1-230
    12. Peroxisomal 3,2-trans-enoyl-CoA isomerase [142006]
      1. Human (Homo sapiens) [TaxId: 9606] [142007] (3) picpic
        SQ O75521 103-347
    13. Chromodomain protein CDY1, C-terminal domain [142008]
      1. Human (Homo sapiens) [TaxId: 9606] [142009] (3) picpic
        SQ Q9Y6F8 282-532
  4. Biotin dependent carboxylase carboxyltransferase domain [89572] (8)
    Pfam 01039
    the active site is formed by two different homologous subunits or domains of this fold
    1. Acetyl-coenzyme A carboxylase [89573]
      duplication: consists of two similar structural domains forming a functional domain of a larger multifunctional enzyme
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89574] (7) picpic
        SQ Q00955 1482-2196
    2. Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) [89575]
      1. Propionibacterium freudenreichii [TaxId: 1744] [89576] (2) picpic
    3. Glutaconyl-CoA decarboxylase A subunit [102210]
      1. Acidaminococcus fermentans [TaxId: 905] [102211] (1) picpic
    4. Propionyl-CoA carboxylase complex B subunit, PccB [117466]
      1. Streptomyces coelicolor [TaxId: 1902] [117467] (4) picpic
        SQ Q9X4K7
      2. Mycobacterium tuberculosis [TaxId: 1773] [142010] (12) picpic
        SQ P96885 20-277! SQ P96885 278-548
      3. Thermotoga maritima [TaxId: 2336] [142011] (12) picpic
        SQ Q9WZH5 1-251! SQ Q9WZH5 252-515
    5. Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA [142012]
      1. Escherichia coli [TaxId: 562] [142013] (1) picpic
        SQ P0ABD5 4-319
    6. Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD [142014]
      1. Escherichia coli [TaxId: 562] [142015] (1) picpic
        SQ P0A9Q6 23-285
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk