Structural Classification of Proteins
home mail help root up expand collapse

Fold: Uracil-DNA glycosylase-like

3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Uracil-DNA glycosylase-like [52140]
    3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134

Superfamilies:

  1. Uracil-DNA glycosylase-like [52141] (4)
    link to SUPERFAMILY database - Superfamily
    1. Uracil-DNA glycosylase [52142] (5)
      1. Uracil-DNA glycosylase [52143]
        1. Human (Homo sapiens) [TaxId: 9606] [52144] (11)
          1. 2hxm picpic
            automatically matched to d1akz__
            complexed with 302
            1. region a:82-304 [136857] picpiclink
          2. 1akz picpic
            mutant
            1. chain a [31007] picpiclink
          3. 1q3f picpic
            complexed with nri, po4, ura
            1. chain a [95671] picpiclink
          4. 1emh picpic
            complexed with p2u; mutant
            1. chain a [31008] picpiclink
          5. 1ssp picpic
            complexed with d1p, ura
            1. chain e [31009] picpiclink
          6. 2oyt picpic
            automatically matched to d1akza_
            complexed with 4mf, aab
            1. region a:82-304 [149079] picpiclink
          7. 1ugh picpicxref
            mutant
            1. chain e [31010] picpiclink
          8. 1emj picpic
            complexed with asu, ura; mutant
            1. chain a [31011] picpiclink
          9. 2ssp picpic
            complexed with d1p; mutant
            1. chain e [31012] picpiclink
          10. 4skn picpic
            complexed with d1p, ura; mutant
            1. chain e [31013] picpiclink
          11. 2oxm picpic
            automatically matched to d1akza_
            complexed with 4mf
            1. region a:82-304 [149059] picpiclink
        2. Atlantic cod (Gadus morhua) [TaxId: 8049] [102212] (1)
          1. 1okb picpic
            complexed with cl, gol; mutant
            1. chain a [93246] picpiclink
            2. chain b [93247] picpiclink
        3. Herpes simplex virus type 1 [TaxId: 10298] [52145] (4)
          1. 1lau picpic
            protein/DNA complex
            1. chain e [31014] picpiclink
          2. 1udh picpic
            complexed with so4, ura
            1. chain a [31015] picpiclink
          3. 1udg picpic
            complexed with so4
            1. chain a [31016] picpiclink
          4. 1udi picpicxref
            1. chain e [31017] picpiclink
        4. Escherichia coli [TaxId: 562] [52146] (12)
          1. 3eug picpic
            complexed with gol; mutant
            1. chain a [31018] picpiclink
          2. 4eug picpic
            mutant
            1. chain a [31019] picpiclink
          3. 2eug picpic
            complexed with ura; mutant
            1. chain a [31020] picpiclink
          4. 1eug picpic
            CASP3
            1. chain a [31021] picpiclink
          5. 5eug picpic
            complexed with ura; mutant
            1. chain a [31022] picpiclink
          6. 1uug picpicxref
            1. chain a [31023] picpiclink
            2. chain c [31024] picpiclink
          7. 2uug picpicxref
            mutant
            1. chain a [31025] picpiclink
            2. chain b [31026] picpiclink
          8. 1flz picpic
            complexed with ura; mutant
            1. chain a [31027] picpiclink
          9. 1lqg picpicxref
            1. chain a [78131] picpiclink
            2. chain b [78132] picpiclink
          10. 1lqm picpicxref
            1. chain a [78141] picpiclink
            2. chain c [78143] picpiclink
            3. chain e [78145] picpiclink
            4. chain g [78147] picpiclink
          11. 1eui picpicxref
            1. chain a [31028] picpiclink
            2. chain b [31029] picpiclink
          12. 1lqj picpic
            1. chain a [78135] picpiclink
            2. chain b [78136] picpiclink
            3. chain c [78137] picpiclink
            4. chain d [78138] picpiclink
        5. Epstein-Barr virus [TaxId: 10376] [159461] (2)
          SQ Q777D9 26-255
          1. 2j8x picpicxrefxref
            complexed with ure
            1. region a:26-255 [145675] picpiclink
          2. 2j8x picpicxrefxref
            automatically matched to 2J8X A:26-255
            complexed with ure
            1. region c:27-255 [145676] picpiclink
    2. Mug-like [52147] (4)
      1. G:T/U mismatch-specific DNA glycosylase, Mug [52148]
        1. Escherichia coli [TaxId: 562] [52149] (4)
          1. 1mug picpic
            complexed with so4
            1. chain a [31030] picpiclink
          2. 1mwi picpic
            DNA product complex
            complexed with d1p
            1. chain a [79574] picpiclink
          3. 1mwj picpic
            DNA pseudo substrate complex
            complexed with du
            1. chain a [79575] picpiclink
          4. 1mtl picpic
            complexed with d1p
            1. chain a [79456] picpiclink
            2. chain b [79457] picpiclink
      2. Thermophilic uracil-DNA glycosylase [89577]
        1. Thermotoga maritima [TaxId: 2336] [89578] (2)
          gene TM0511
          1. 1vk2 picpic
            structural genomics
            complexed with fs4, unl
            1. chain a [100845] picpiclink
          2. 1l9g picpic
            complexed with fs4, so4
            1. chain a [84568] picpiclink
        2. Thermus thermophilus [TaxId: 274] [102213] (2)
          1. 1ui0 picpic
            complexed with fs4, so4, ura
            1. chain a [99411] picpiclink
          2. 1ui1 picpic
            complexed with fs4
            1. chain a [99412] picpiclink
      3. G/T mismatch-specific thymine DNA glycosylase [159462]
        1. Human (Homo sapiens) [TaxId: 9606] [159463] (2)
          SQ Q13569 117-132
          1. 1wyw picpicxref
            complexed with cl, mg, na
            1. region a:117-132 [144566] picpiclink
          2. 2d07 picpicxref
            automatically matched to 1WYW A:117-132
            1. region a:117-132 [145061] picpiclink
    3. Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 [89579] (1)
      1. Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 [89580]
        1. African clawed frog (Xenopus laevis) [TaxId: 8355] [89581] (3)
          1. 1oe4 picpic
            complexed with gol, ipa; mutant
            1. chain a [86895] picpiclink
            2. chain b [86896] picpiclink
          2. 1oe5 picpic
            complexed with dur, epe, gol, ipa, ura; mutant
            1. chain a [86897] picpiclink
            2. chain b [86898] picpiclink
          3. 1oe6 picpic
            complexed with gol, hmu, ipa; mutant
            1. chain a [86899] picpiclink
            2. chain b [86900] picpiclink
    4. AF0587 domain-like [159464] (1)
      a middle domain in the founder protein
      1. Uncharacterized protein AF0587 [159465]
        1. Archaeoglobus fulgidus [TaxId: 2234] [159466] (1)
          SQ O29668 244-383
          1. 2q07 picpicxrefxref
            1. region a:244-393 [149982] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk