Structural Classification of Proteins
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Superfamily: Formate/glycerate dehydrogenase catalytic domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Flavodoxin-like [52171]
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. Superfamily: Formate/glycerate dehydrogenase catalytic domain-like [52283]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Formate/glycerate dehydrogenases, substrate-binding domain [52284] (9)
    this domain is interrupted by the Rossmann-fold domain
    1. Formate dehydrogenase [52285]
      contains an additional beta-hairpin after the common fold
      1. Pseudomonas sp., strain 101 [TaxId: 306] [52286] (2)
        1. 2nac picpicxref
          complexed with so4
          1. region a:1-147,a:336-374 [31348] picpiclink
          2. region b:1-147,b:336-374 [31349] picpiclink
        2. 2nad picpicxref
          complexed with azi, nad, so4
          1. region a:1-147,a:336-391 [31350] picpiclink
          2. region b:1-147,b:336-383 [31351] picpiclink
    2. Putative formate dehydrogenase [52287]
      1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [52288] (1)
        1. 1qp8 picpicxref
          complexed with ndp
          1. region a:1-82,a:264-302 [31352] picpiclink
          2. region b:1-82,b:264-302 [31353] picpiclink
    3. Transcription corepressor CtbP [82347]
      C-terminal binding protein 1; a dehydrogenase
      1. Human (Homo sapiens), Ctbp1 [TaxId: 9606] [82348] (1)
        1. 1mx3 picpicxref
          complexed with acy, nad
          1. region a:27-125,a:319-352 [79639] picpiclink
      2. Rat (Rattus norvegicus), Ctbp3 [TaxId: 10116] [89597] (2)
        1. 1hku picpicxref
          complexed with cea, fmt, gol, nad
          1. region a:15-114,a:308-346 [83558] picpiclink
        2. 1hl3 picpicxref
          complexed with nad
          1. region a:15-114,a:308-346 [83586] picpiclink
    4. D-2-hydroxyisocaproate dehydrogenase [52289]
      1. Lactobacillus casei [TaxId: 1582] [52290] (1)
        1. 1dxy picpicxref
          complexed with coi, nad, so4
          1. region a:1-100,a:300-330 [31354] picpiclink
    5. D-glycerate dehydrogenase [52291]
      1. Hyphomicrobium methylovorum [TaxId: 84] [52292] (1)
        1. 1gdh picpicxref
          complexed with so4
          1. region a:2-100,a:292-321 [31355] picpiclink
          2. region b:2-100,b:292-321 [31356] picpiclink
    6. Phosphoglycerate dehydrogenase [52293]
      has additional C-terminal domain of the ferredoxin fold
      1. Escherichia coli [TaxId: 562] [52294] (18)
        1. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nad; mutant
          1. region a:7-107,a:296-326 [118933] picpiclink
        2. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nad; mutant
          1. region b:7-107,b:296-326 [118936] picpiclink
        3. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nad; mutant
          1. region c:9-107,c:299-326 [118939] picpiclink
        4. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nad; mutant
          1. region d:7-107,d:296-326 [118942] picpiclink
        5. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with akg, nad, po4
          1. region a:7-107,a:296-326 [122873] picpiclink
        6. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with akg, nad, po4
          1. region b:7-107,b:296-326 [122876] picpiclink
        7. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with akg, nad, po4
          1. region c:7-107,c:296-326 [122879] picpiclink
        8. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with akg, nad, po4
          1. region d:7-107,d:296-326 [122882] picpiclink
        9. 2p9c picpicxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region a:7-107,a:296-326 [139557] picpiclink
        10. 2p9c picpicxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region b:7-107,b:296-326 [139560] picpiclink
        11. 1psd picpicxrefxref
          complexed with nad
          1. region a:7-107,a:296-326 [31357] picpiclink
          2. region b:7-107,b:296-326 [31358] picpiclink
        12. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region a:7-107,a:296-326 [139563] picpiclink
        13. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region b:7-107,b:296-326 [139566] picpiclink
        14. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region c:7-107,c:296-326 [139569] picpiclink
        15. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region d:8-107,d:296-326 [139572] picpiclink
        16. 2p9g picpicxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region a:7-107,a:296-326 [139575] picpiclink
        17. 2p9g picpicxrefxrefxrefxref
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region b:7-107,b:296-326 [139578] picpiclink
        18. 2pa3 picpicxrefxref
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region a:7-107,a:296-326 [139639] picpiclink
      2. Mycobacterium tuberculosis [TaxId: 1773] [142063] (2)
        SQ P0A544 2-97,282-315
        there is an intervening domain between this domain and regulatory (C-terminal) domain
        1. 1ygy picpicxrefxrefxrefxrefxrefxref
          complexed with tar
          1. region a:3-98,a:283-316 [123151] picpiclink
        2. 1ygy picpicxrefxrefxrefxrefxrefxref
          automatically matched to 1YGY A:3-98,A:283-316
          complexed with tar
          1. region b:3-98,b:283-316 [123155] picpiclink
    7. D-lactate dehydrogenase [52295]
      1. Lactobacillus helveticus [TaxId: 1587] [52296] (3)
        1. 1j4a picpicxref
          complexed with sul; mutant
          1. region a:2-103,a:301-332 [71503] picpiclink
          2. region b:2-103,b:301-332 [71505] picpiclink
          3. region c:2-103,c:301-332 [71507] picpiclink
          4. region d:2-103,d:301-333 [71509] picpiclink
        2. 1j49 picpicxref
          complexed with nad, so4
          1. region a:1-103,a:301-332 [71499] picpiclink
          2. region b:1-103,b:301-332 [71501] picpiclink
        3. 2dld picpicxref
          complexed with nad, oxm
          1. region a:1-103,a:301-337 [31359] picpiclink
          2. region b:1-103,b:301-337 [31360] picpiclink
  2. L-alanine dehydrogenase-like [52297] (2)
    1. L-alanine dehydrogenase [52298]
      1. Phormidium lapideum [TaxId: 32060] [52299] (3)
        1. 1say picpicxref
          complexed with pyr
          1. region a:1-135,a:304-361 [31362] picpiclink
        2. 1pjc picpicxref
          complexed with nad
          1. region a:1-135,a:304-361 [31361] picpiclink
        3. 1pjb picpicxref
          1. region a:1-135,a:304-361 [31363] picpiclink
    2. Nicotinamide nucleotide transhydrogenase dI component [63963]
      L-alanine dehydrogenase homologue
      1. Rhodospirillum rubrum [TaxId: 1085] [63964] (28)
        1. 1l7d picpicxref
          1. region a:1-143,a:327-377 [77775] picpiclink
          2. region b:401-543,b:727-783 [77777] picpiclink
          3. region c:801-943,c:1127-1178 [77779] picpiclink
          4. region d:1201-1343,d:1527-1577 [77781] picpiclink
        2. 1f8g picpicxref
          complexed with nad
          1. region a:1-143,a:327-384 [59696] picpiclink
          2. region b:1-143,b:327-384 [59698] picpiclink
          3. region c:1-143,c:327-377 [59700] picpiclink
          4. region d:1-143,d:327-380 [59702] picpiclink
        3. 2fsv picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, nap; mutant
          1. region a:1-143,a:327-378 [134038] picpiclink
        4. 2fsv picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, nap; mutant
          1. region b:1-143,b:327-378 [134040] picpiclink
        5. 1l7e picpicxref
          complexed with nai
          1. region a:1-143,a:327-378 [77783] picpiclink
          2. region b:401-543,b:727-780 [77785] picpiclink
          3. region c:801-943,c:1127-1179 [77787] picpiclink
          4. region d:1201-1343,d:1527-1577 [77789] picpiclink
        6. 1u2g picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with apr, gol, ndp
          1. region a:1-143,a:327-378 [119481] picpiclink
        7. 1u2g picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with apr, gol, ndp
          1. region b:1-143,b:327-378 [119483] picpiclink
        8. 2oor picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, txp
          1. region a:1-143,a:327-378 [139172] picpiclink
        9. 2oor picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, txp
          1. region b:1-143,b:327-378 [139174] picpiclink
        10. 1u28 picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, nap
          1. region a:1-143,a:327-378 [119469] picpiclink
        11. 1u28 picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, nap
          1. region b:1-143,b:327-378 [119471] picpiclink
        12. 2oo5 picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with nap, so4, txd
          1. region a:1-143,a:327-378 [139163] picpiclink
        13. 2oo5 picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with nap, so4, txd
          1. region b:1-143,b:327-378 [139165] picpiclink
        14. 2fr8 picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with nad, nap; mutant
          1. region a:1-143,a:327-379 [133974] picpiclink
        15. 2fr8 picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with nad, nap; mutant
          1. region b:1-143,b:327-375 [133976] picpiclink
        16. 1ptj picpicxrefxref
          complexed with dIII component
          complexed with gol, nap, snd
          1. region a:1-143,a:327-371 [95100] picpiclink
          2. region b:1-143,b:327-381 [95102] picpiclink
        17. 1nm5 picpicxrefxref
          complexed with dIII component
          complexed with gol, nad, nap; mutant
          1. region a:1-143,a:327-374 [91969] picpiclink
          2. region b:1-143,b:327-378 [91971] picpiclink
        18. 1hzz picpicxrefxref
          complexed with dIII component
          complexed with nad, nap
          1. region a:1-143,a:327-371 [61471] picpiclink
          2. region b:1-143,b:327-381 [61473] picpiclink
        19. 1u2d picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, ndp
          1. region a:1-143,a:327-378 [119476] picpiclink
        20. 1u2d picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with gol, nad, ndp
          1. region b:1-143,b:327-378 [119478] picpiclink
        21. 2frd picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with nad, nap; mutant
          1. region a:1-143,a:327-370 [133981] picpiclink
        22. 2frd picpicxrefxrefxref
          automatically matched to d1f8ga2
          complexed with nad, nap; mutant
          1. region b:1-143,b:327-370 [133983] picpiclink
        23. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1f8ga2
          complexed with na, nad, ndp, suc
          1. region a:1-143,a:327-378 [122123] picpiclink
        24. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1f8ga2
          complexed with na, nad, ndp, suc
          1. region b:1-143,b:327-378 [122125] picpiclink
        25. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1f8ga2
          complexed with na, nad, ndp, suc
          1. region d:1-143,d:327-378 [122128] picpiclink
        26. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1f8ga2
          complexed with na, nad, ndp, suc
          1. region e:1-143,e:327-378 [122130] picpiclink
        27. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1f8ga2
          complexed with na, nad, ndp, suc
          1. region g:1-143,g:327-378 [122133] picpiclink
        28. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1f8ga2
          complexed with na, nad, ndp, suc
          1. region h:1-143,h:327-377 [122135] picpiclink
  3. S-adenosylhomocystein hydrolase [52300] (3)
    1. S-adenosylhomocystein hydrolase [52301]
      contains additional secondary structures disguising the superfamily fold
      1. Human (Homo sapiens) [TaxId: 9606] [52302] (2)
        1. 1li4 picpicxref
          complexed with ipa, nah, noc
          1. region a:3-189,a:353-432 [84617] picpiclink
        2. 1a7a picpicxref
          complexed with adc, nah
          1. region a:2-189,a:353-432 [31364] picpiclink
          2. region b:3-189,b:353-432 [31365] picpiclink
      2. Rat (Rattus norvegicus) [TaxId: 10116] [52303] (17)
        1. 1b3r picpicxref
          complexed with nad; mutant
          1. region a:4-189,a:353-431 [31366] picpiclink
          2. region b:4-189,b:353-431 [31367] picpiclink
          3. region c:4-189,c:353-431 [31368] picpiclink
          4. region d:4-189,d:353-431 [31369] picpiclink
        2. 1k0u picpicxref
          complexed with dea, nad
          1. region a:2-189,a:353-431 [67971] picpiclink
          2. region b:2-189,b:353-431 [67973] picpiclink
          3. region c:2-189,c:353-431 [67975] picpiclink
          4. region d:2-189,d:353-431 [67977] picpiclink
          5. region e:2-189,e:353-431 [67979] picpiclink
          6. region f:2-189,f:353-431 [67981] picpiclink
          7. region g:2-189,g:353-431 [67983] picpiclink
          8. region h:2-189,h:353-431 [67985] picpiclink
        3. 1ky5 picpicxref
          complexed with ady, nai; mutant
          1. region a:2-189,a:353-431 [77621] picpiclink
          2. region b:1002-1189,b:1353-1431 [77623] picpiclink
          3. region c:2002-2189,c:2353-2431 [77625] picpiclink
          4. region d:3002-3189,d:3353-3431 [77627] picpiclink
        4. 1ky4 picpicxref
          complexed with nad
          1. region a:4-189,a:353-431 [77613] picpiclink
          2. region b:1004-1189,b:1353-1431 [77615] picpiclink
          3. region c:2004-2189,c:2353-2431 [77617] picpiclink
          4. region d:3004-3189,d:3353-3431 [77619] picpiclink
        5. 1xwf picpicxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with adn, nad; mutant
          1. region a:2-189,a:353-431 [122393] picpiclink
        6. 1xwf picpicxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with adn, nad; mutant
          1. region b:2-189,b:353-431 [122395] picpiclink
        7. 1xwf picpicxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with adn, nad; mutant
          1. region c:2-189,c:353-431 [122397] picpiclink
        8. 1xwf picpicxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with adn, nad; mutant
          1. region d:2-189,d:353-431 [122399] picpiclink
        9. 1d4f picpicxref
          complexed with adn, nad; mutant
          1. region a:2-189,a:353-431 [31370] picpiclink
          2. region b:2-189,b:353-431 [31371] picpiclink
          3. region c:2-189,c:353-431 [31372] picpiclink
          4. region d:2-189,d:353-431 [31373] picpiclink
        10. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region a:2-189,a:353-431 [136152] picpiclink
        11. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region b:2-189,b:353-431 [136154] picpiclink
        12. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region c:2-189,c:353-431 [136156] picpiclink
        13. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region d:2-189,d:353-431 [136158] picpiclink
        14. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region e:2-189,e:353-431 [136160] picpiclink
        15. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region f:2-189,f:353-431 [136162] picpiclink
        16. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region g:2-189,g:353-431 [136164] picpiclink
        17. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1d4fa2
          complexed with 3dd, nad
          1. region h:2-189,h:353-431 [136166] picpiclink
      3. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117480] (1)
        SQ P50250
        1. 1v8b picpicxref
          complexed with adn, nah
          1. region a:4-234,a:398-479 [113565] picpiclink
          2. region b:4-234,b:398-479 [113567] picpiclink
          3. region c:4-234,c:398-479 [113569] picpiclink
          4. region d:4-234,d:398-479 [113571] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk