Family: Formate/glycerate dehydrogenases, substrate-binding domain

this domain is interrupted by the Rossmann-fold domain

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: Flavodoxin-like [52171]
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
4. Superfamily: Formate/glycerate dehydrogenase catalytic domain-like [52283]
   uperfamily
5. Family: Formate/glycerate dehydrogenases, substrate-binding domain [52284]
   this domain is interrupted by the Rossmann-fold domain

Protein Domains:

1. Formate dehydrogenase [52285]
   contains an additional beta-hairpin after the common fold
   1. Pseudomonas sp., strain 101 [TaxId: 306] [52286] (2)
      1. 2nac
         complexed with so4
         1. region a:1-147,a:336-374 [31348]
         2. region b:1-147,b:336-374 [31349]
      2. 2nad
         complexed with azi, nad, so4
         1. region a:1-147,a:336-391 [31350]
         2. region b:1-147,b:336-383 [31351]
2. Putative formate dehydrogenase [52287]
   1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [52288] (1)
      1. 1qp8
         complexed with ndp
         1. region a:1-82,a:264-302 [31352]
         2. region b:1-82,b:264-302 [31353]
3. Transcription corepressor CtbP [82347]
   C-terminal binding protein 1; a dehydrogenase
   1. Human (Homo sapiens), Ctbp1 [TaxId: 9606] [82348] (1)
      1. 1mx3
         complexed with acy, nad
         1. region a:27-125,a:319-352 [79639]
   2. Rat (Rattus norvegicus), Ctbp3 [TaxId: 10116] [89597] (2)
      1. 1hku
         complexed with cea, fmt, gol, nad
         1. region a:15-114,a:308-346 [83558]
      2. 1hl3
         complexed with nad
         1. region a:15-114,a:308-346 [83586]
4. D-2-hydroxyisocaproate dehydrogenase [52289]
   1. Lactobacillus casei [TaxId: 1582] [52290] (1)
      1. 1dxy
         complexed with coi, nad, so4
         1. region a:1-100,a:300-330 [31354]
5. D-glycerate dehydrogenase [52291]
   1. Hyphomicrobium methylovorum [TaxId: 84] [52292] (1)
      1. 1gdh
         complexed with so4
         1. region a:2-100,a:292-321 [31355]
         2. region b:2-100,b:292-321 [31356]
6. Phosphoglycerate dehydrogenase [52293]
   has additional C-terminal domain of the ferredoxin fold
   1. Escherichia coli [TaxId: 562] [52294] (18)
      1. 1sc6
         automatically matched to d1psda2
         complexed with nad; mutant
         1. region a:7-107,a:296-326 [118933]
      2. 1sc6
         automatically matched to d1psda2
         complexed with nad; mutant
         1. region b:7-107,b:296-326 [118936]
      3. 1sc6
         automatically matched to d1psda2
         complexed with nad; mutant
         1. region c:9-107,c:299-326 [118939]
      4. 1sc6
         automatically matched to d1psda2
         complexed with nad; mutant
         1. region d:7-107,d:296-326 [118942]
      5. 1yba
         automatically matched to d1psda2
         complexed with akg, nad, po4
         1. region a:7-107,a:296-326 [122873]
      6. 1yba
         automatically matched to d1psda2
         complexed with akg, nad, po4
         1. region b:7-107,b:296-326 [122876]
      7. 1yba
         automatically matched to d1psda2
         complexed with akg, nad, po4
         1. region c:7-107,c:296-326 [122879]
      8. 1yba
         automatically matched to d1psda2
         complexed with akg, nad, po4
         1. region d:7-107,d:296-326 [122882]
      9. 2p9c
         automatically matched to d1psda2
         complexed with nai, ser; mutant
         1. region a:7-107,a:296-326 [139557]
      10. 2p9c
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region b:7-107,b:296-326 [139560]
      11. 1psd
          complexed with nad
          1. region a:7-107,a:296-326 [31357]
          2. region b:7-107,b:296-326 [31358]
      12. 2p9e
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region a:7-107,a:296-326 [139563]
      13. 2p9e
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region b:7-107,b:296-326 [139566]
      14. 2p9e
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region c:7-107,c:296-326 [139569]
      15. 2p9e
          automatically matched to d1psda2
          complexed with cit, nai, po4, so4; mutant
          1. region d:8-107,d:296-326 [139572]
      16. 2p9g
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region a:7-107,a:296-326 [139575]
      17. 2p9g
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region b:7-107,b:296-326 [139578]
      18. 2pa3
          automatically matched to d1psda2
          complexed with nai, ser; mutant
          1. region a:7-107,a:296-326 [139639]
   2. Mycobacterium tuberculosis [TaxId: 1773] [142063] (2)
      SQ P0A544 2-97,282-315
      there is an intervening domain between this domain and regulatory (C-terminal) domain
      1. 1ygy
         complexed with tar
         1. region a:3-98,a:283-316 [123151]
      2. 1ygy
         automatically matched to 1YGY A:3-98,A:283-316
         complexed with tar
         1. region b:3-98,b:283-316 [123155]
7. D-lactate dehydrogenase [52295]
   1. Lactobacillus helveticus [TaxId: 1587] [52296] (3)
      1. 1j4a
         complexed with sul; mutant
         1. region a:2-103,a:301-332 [71503]
         2. region b:2-103,b:301-332 [71505]
         3. region c:2-103,c:301-332 [71507]
         4. region d:2-103,d:301-333 [71509]
      2. 1j49
         complexed with nad, so4
         1. region a:1-103,a:301-332 [71499]
         2. region b:1-103,b:301-332 [71501]
      3. 2dld
         complexed with nad, oxm
         1. region a:1-103,a:301-337 [31359]
         2. region b:1-103,b:301-337 [31360]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk