Structural Classification of Proteins

Superfamily: N-(deoxy)ribosyltransferase-like

: there are similar active site architectures as well as the catalytic mechanisms of functionally characterised members
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Flavodoxin-like [52171]
3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
Superfamily: N-(deoxy)ribosyltransferase-like [52309]
there are similar active site architectures as well as the catalytic mechanisms of functionally characterised members
uperfamily

Families:

N-deoxyribosyltransferase [52310] (3)
1. Nucleoside 2-deoxyribosyltransferase [52311]
  class II N-deoxyribosyltransferase
  1. Lactobacillus leichmannii [TaxId: 28039] [52312] (2)
    1. 1f8y
      complexed with 5-methyl-2'-deoxypseudouridine
      complexed with 5md
      1. chain a [31395]
      2. chain b [31396]
    2. 1f8x
      1. chain a [31397]
      2. chain b [31398]
  2. Trypanosoma brucei [TaxId: 5691] [142064] (10)
    SQ Q57VC7 1-152
    1. 2f62
      automatically matched to 2A0K A:9-160
      complexed with 12m, gol, so4
      1. region a:9-160 [133021]
    2. 2f62
      automatically matched to 2A0K A:9-160
      complexed with 12m, gol, so4
      1. region b:9-160 [133022]
    3. 2f64
      automatically matched to 2A0K A:9-160
      complexed with 12q, gol, so4
      1. region a:9-160 [133024]
    4. 2f64
      automatically matched to 2A0K A:9-160
      complexed with 12q, gol, so4
      1. region b:9-160 [133025]
    5. 2f67
      automatically matched to 2A0K A:9-160
      complexed with 12b, gol, so4
      1. region a:9-160 [133033]
    6. 2f67
      automatically matched to 2A0K A:9-160
      complexed with 12b, gol, so4
      1. region b:9-160 [133034]
    7. 2f2t
      automatically matched to 2A0K A:9-160
      complexed with 5iq, gol, so4; mutant
      1. region a:9-160 [132847]
    8. 2f2t
      automatically matched to 2A0K A:9-160
      complexed with 5iq, gol, so4; mutant
      1. region b:9-160 [132848]
    9. 2a0k
      complexed with gol, so4
      1. region a:9-160 [125954]
    10. 2a0k
      automatically matched to 2A0K A:9-160
      complexed with gol, so4
      1. region b:9-160 [125955]
2. Purine transdeoxyribosylase [102244]
  class I N-deoxyribosyltransferase
  1. Lactobacillus helveticus [TaxId: 1587] [102245] (5)
    1. 1s2d
      complexed with ade, ar4
      1. chain a [98377]
      2. chain b [98378]
      3. chain c [98379]
    2. 1s2l
      1. chain a [98390]
      2. chain b [98391]
      3. chain c [98392]
    3. 1s2g
      complexed with 3d1
      1. chain a [98382]
      2. chain b [98383]
      3. chain c [98384]
    4. 1s2i
      complexed with bp1
      1. chain a [98386]
      2. chain b [98387]
      3. chain c [98388]
    5. 1s3f
      complexed with sni
      1. chain a [98430]
      2. chain b [98431]
      3. chain c [98432]
Hypothetical protein PA1492 [110461] (1)
lacks the last strand; monomer; predicted deoxyribosyltransferase activity
1. Hypothetical protein PA1492 [110462]
  1. Pseudomonas aeruginosa [TaxId: 287] [110463] (1)
    SQ Q9I3M0
    1. 1t1j
      Structural genomics target
      1. chain a [106249]
      2. chain b [106250]
ADP ribosyl cyclase-like [56630] (3)
contains extra N-terminal all-alpha subdomain
1. ADP ribosyl cyclase [56631]
  1. California sea hare (Aplysia californica) [TaxId: 6500] [56632] (5)
    1. 1r12
      1. chain a [96780]
      2. chain b [96781]
    2. 1r16
      complexed with pyf, rob
      1. chain a [96794]
      2. chain b [96795]
    3. 1r0s
      mutant
      1. chain a [96737]
      2. chain b [96738]
    4. 1r15
      complexed with nca, rob
      1. chain a [96786]
      2. chain b [96787]
      3. chain c [96788]
      4. chain d [96789]
      5. chain e [96790]
      6. chain f [96791]
      7. chain g [96792]
      8. chain h [96793]
    5. 1lbe
      1. chain a [42773]
      2. chain b [42774]
  2. Human (Homo sapiens) [TaxId: 9606] [159490] (2)
    SQ P28907 45-291
    1. 2ef1
      complexed with epe
      1. region a:45-291 [146807]
    2. 2ef1
      automatically matched to 2EF1 A:45-291
      complexed with epe
      1. region b:45-289 [146808]
2. Bone marror stromal cell antigen 1, BST-1/CD157 (ADP ribosyl cyclase-2) [75597]
  1. Human (Homo sapiens) [TaxId: 9606] [75598] (6)
    1. 1isi
      complexed with ena, nag, nca; mutant
      1. chain a [71394]
      2. chain b [71395]
    2. 1isj
      complexed with nag, nmn; mutant
      1. chain a [71396]
      2. chain b [71397]
    3. 1ish
      complexed with enp, nag; mutant
      1. chain a [71392]
      2. chain b [71393]
    4. 1isf
      complexed with gol, nag; mutant
      1. chain a [71388]
      2. chain b [71389]
    5. 1isg
      complexed with nag, sap; mutant
      1. chain a [71390]
      2. chain b [71391]
    6. 1ism
      complexed with nag, nca; mutant
      1. chain a [71398]
      2. chain b [71399]