Structural Classification of Proteins
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Family: N-deoxyribosyltransferase

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Flavodoxin-like [52171]
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. Superfamily: N-(deoxy)ribosyltransferase-like [52309]
    there are similar active site architectures as well as the catalytic mechanisms of functionally characterised members
    link to SUPERFAMILY database - Superfamily
  5. Family: N-deoxyribosyltransferase [52310]

Protein Domains:

  1. Nucleoside 2-deoxyribosyltransferase [52311]
    class II N-deoxyribosyltransferase
    1. Lactobacillus leichmannii [TaxId: 28039] [52312] (2)
      1. 1f8y picpic
        complexed with 5-methyl-2'-deoxypseudouridine
        complexed with 5md
        1. chain a [31395] picpiclink
        2. chain b [31396] picpiclink
      2. 1f8x picpic
        1. chain a [31397] picpiclink
        2. chain b [31398] picpiclink
    2. Trypanosoma brucei [TaxId: 5691] [142064] (10)
      SQ Q57VC7 1-152
      1. 2f62 picpic
        automatically matched to 2A0K A:9-160
        complexed with 12m, gol, so4
        1. region a:9-160 [133021] picpiclink
      2. 2f62 picpic
        automatically matched to 2A0K A:9-160
        complexed with 12m, gol, so4
        1. region b:9-160 [133022] picpiclink
      3. 2f64 picpic
        automatically matched to 2A0K A:9-160
        complexed with 12q, gol, so4
        1. region a:9-160 [133024] picpiclink
      4. 2f64 picpic
        automatically matched to 2A0K A:9-160
        complexed with 12q, gol, so4
        1. region b:9-160 [133025] picpiclink
      5. 2f67 picpic
        automatically matched to 2A0K A:9-160
        complexed with 12b, gol, so4
        1. region a:9-160 [133033] picpiclink
      6. 2f67 picpic
        automatically matched to 2A0K A:9-160
        complexed with 12b, gol, so4
        1. region b:9-160 [133034] picpiclink
      7. 2f2t picpic
        automatically matched to 2A0K A:9-160
        complexed with 5iq, gol, so4; mutant
        1. region a:9-160 [132847] picpiclink
      8. 2f2t picpic
        automatically matched to 2A0K A:9-160
        complexed with 5iq, gol, so4; mutant
        1. region b:9-160 [132848] picpiclink
      9. 2a0k picpic
        complexed with gol, so4
        1. region a:9-160 [125954] picpiclink
      10. 2a0k picpic
        automatically matched to 2A0K A:9-160
        complexed with gol, so4
        1. region b:9-160 [125955] picpiclink
  2. Purine transdeoxyribosylase [102244]
    class I N-deoxyribosyltransferase
    1. Lactobacillus helveticus [TaxId: 1587] [102245] (5)
      1. 1s2d picpic
        complexed with ade, ar4
        1. chain a [98377] picpiclink
        2. chain b [98378] picpiclink
        3. chain c [98379] picpiclink
      2. 1s2l picpic
        1. chain a [98390] picpiclink
        2. chain b [98391] picpiclink
        3. chain c [98392] picpiclink
      3. 1s2g picpic
        complexed with 3d1
        1. chain a [98382] picpiclink
        2. chain b [98383] picpiclink
        3. chain c [98384] picpiclink
      4. 1s2i picpic
        complexed with bp1
        1. chain a [98386] picpiclink
        2. chain b [98387] picpiclink
        3. chain c [98388] picpiclink
      5. 1s3f picpic
        complexed with sni
        1. chain a [98430] picpiclink
        2. chain b [98431] picpiclink
        3. chain c [98432] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk