Family: DJ-1/PfpI

contains a catalytic triad or dyad different from the class I GAT triad

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: Flavodoxin-like [52171]
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
4. Superfamily: Class I glutamine amidotransferase-like [52317]
   conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures
   uperfamily
5. Family: DJ-1/PfpI [52325]
   contains a catalytic triad or dyad different from the class I GAT triad

Protein Domains:

1. Intracellular protease [52326]
   1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [52327] (1)
      1. 1g2i
         complexed with so4
         1. chain a [31438]
         2. chain b [31439]
         3. chain c [31440]
2. Hypothetical protein YhbO [89601]
   1. Escherichia coli [TaxId: 562] [89602] (1)
      1. 1oi4
         structural genomics
         1. region a:23-192 [144364]
         2. region b:223-392 [144365]
3. DJ-1 [89603]
   RNA-binding protein regulatory subunit
   1. Human (Homo sapiens) [TaxId: 9606] [89604] (20)
      SQ Q99497
      1. 1p5f
         1. chain a [94142]
      2. 1soa
         1. chain a [105843]
      3. 2or3
         automatically matched to d1pdwg_
         complexed with so4
         1. region a:2-188 [139256]
      4. 2or3
         automatically matched to d1pdwg_
         complexed with so4
         1. region b:2-188 [139257]
      5. 2r1u
         automatically matched to d1pdwg_
         1. region a:2-188 [151527]
      6. 2r1u
         automatically matched to d1pdwg_
         1. region b:2-188 [151528]
      7. 1q2u
         1. chain a [95642]
      8. 1ps4
         1. chain a [95068]
      9. 1pe0
         mutant
         1. chain a [88045]
         2. chain b [88046]
      10. 1pdv
          complexed with mse
          1. chain a [88036]
      11. 1ucf
          1. chain a [99173]
          2. chain b [99174]
      12. 1pdw
          complexed with mse
          1. chain a [88037]
          2. chain b [88038]
          3. chain c [88039]
          4. chain d [88040]
          5. chain e [88041]
          6. chain f [88042]
          7. chain g [88043]
          8. chain h [88044]
      13. 1j42
          1. chain a [90837]
      14. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region a:2-188 [155686]
      15. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region b:202-388 [155687]
      16. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region c:402-588 [155688]
      17. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region d:603-788 [155689]
      18. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region e:802-988 [155690]
      19. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region f:1003-1188 [155691]
      20. 3bwe
          automatically matched to d1pdwg_
          complexed with po4
          1. region g:1203-1388 [155692]
4. Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) [89606]
   involved in an early stage of isoprenoid biosynthesis; contains a Cys-Glu putative catalytic dyad
   1. Escherichia coli [TaxId: 562] [89607] (2)
      1. 1vhq
         structural genomics
         complexed with act
         1. chain a [100696]
         2. chain b [100697]
      2. 1oy1
         structural genomics; NESG target ER105
         complexed with mse
         1. chain a [87548]
         2. chain b [87549]
         3. chain c [87550]
         4. chain d [87551]
5. HSP31 (HchA; YedU) [89609]
   contains a buried Cys-His-Asp triad within one subunit
   1. Escherichia coli [TaxId: 562] [89610] (5)
      1. 1n57
         complexed with mg, mse
         1. chain a [85328]
      2. 1ons
         complexed with zn2
         1. chain a [93371]
      3. 1izz
         1. chain a [90731]
      4. 1izy
         1. chain a [90729]
         2. chain b [90730]
      5. 1pv2
         1. chain a [95142]
         2. chain b [95143]
         3. chain c [95144]
         4. chain d [95145]
         5. chain e [95146]
         6. chain f [95147]
         7. chain g [95148]
         8. chain h [95149]
6. Hypothetical protein Ydr533Cp [102253]
   contains a buried Cys-His-Glu triad within one subunit
   1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [102254] (4)
      1. 1qvz
         structural genomics
         mutant
         1. chain a [96453]
         2. chain b [96454]
      2. 1qvw
         structural genomics
         complexed with gol; mutant
         1. chain a [96446]
         2. chain b [96447]
      3. 1rw7
         1. chain a [97963]
      4. 1qvv
         structural genomics
         1. chain a [96442]
         2. chain b [96443]
         3. chain c [96444]
         4. chain d [96445]
7. GK2698 ortholog [117481]
   1. Bacillus stearothermophilus [TaxId: 1422] [117482] (1)
      SQ Q5KWF3; 96% sequence identity; Geobacillus kaustophilus TaxID: 1462
      1. 1u9c
         Structural genomics target; APC35852
         1. chain a [113234]
8. Protein ThiJ (YajL) [142070]
   1. Escherichia coli [TaxId: 562] [142071] (2)
      SQ Q46948 2-196
      1. 2ab0
         1. region a:2-196 [126501]
      2. 2ab0
         automatically matched to 2AB0 A:2-196
         1. region b:2-196 [126502]
9. Hypothetical protein Atu0886 [142072]
   1. Agrobacterium tumefaciens [TaxId: 358] [142073] (3)
      SQ Q8UGZ9 1-188
      1. 2fex
         complexed with gol, so4
         1. region a:1-188 [133354]
      2. 2fex
         automatically matched to 2FEX A:1-188
         complexed with gol, so4
         1. region b:1-188 [133355]
      3. 2fex
         automatically matched to 2FEX A:1-188
         complexed with gol, so4
         1. region c:1-188 [133356]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk