Structural Classification of Proteins
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Family: N-type ATP pyrophosphatases

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Adenine nucleotide alpha hydrolase-like [52373]
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. Superfamily: Adenine nucleotide alpha hydrolases-like [52402]
    share similar mode of ligand (Adenosine group) binding
    can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group
    link to SUPERFAMILY database - Superfamily
  5. Family: N-type ATP pyrophosphatases [52403]

Protein Domains:

  1. GMP synthetase, central domain [52404]
    1. Escherichia coli [TaxId: 562] [52405] (1)
      1. 1gpm picpicxrefxref
        complexed with amp, cit, mg, po4, pop
        1. region a:208-404 [31608] picpiclink
        2. region b:208-404 [31609] picpiclink
        3. region c:208-404 [31610] picpiclink
        4. region d:208-404 [31611] picpiclink
  2. NH3-dependent NAD+-synthetase [52406]
    1. Bacillus subtilis [TaxId: 1423] [52407] (7)
      1. 1kqp picpic
        complexed with adj, edo, mg, pop
        1. chain a [72883] picpiclink
        2. chain b [72884] picpiclink
      2. 2nsy picpic
        complexed with adn, cry, mg, pop
        1. chain a [31612] picpiclink
        2. chain b [31613] picpiclink
      3. 1ih8 picpic
        complexed with apc, mg
        1. chain a [62377] picpiclink
        2. chain b [62378] picpiclink
      4. 1ee1 picpic
        complexed with atp, dnd, mg
        1. chain a [59409] picpiclink
        2. chain b [59410] picpiclink
      5. 1nsy picpic
        complexed with amp, atp, mg, pop
        1. chain a [31614] picpiclink
        2. chain b [31615] picpiclink
      6. 1fyd picpic
        complexed with amp, mg, pop
        1. chain a [60113] picpiclink
        2. chain b [60114] picpiclink
      7. 1ifx picpic
        complexed with dnd
        1. chain a [62352] picpiclink
        2. chain b [62353] picpiclink
    2. Escherichia coli [TaxId: 562] [142083] (5)
      SQ P18843 2-275
      1. 1wxi picpic
        automatically matched to 1WXE A:2-275
        complexed with amp, dpo, mg
        1. region a:2-275 [121400] picpiclink
      2. 1wxh picpic
        automatically matched to 1WXE A:2-275
        complexed with nad
        1. region a:2-275 [121399] picpiclink
      3. 1wxe picpic
        complexed with amp, mg
        1. region a:2-275 [121396] picpiclink
      4. 1wxg picpic
        automatically matched to 1WXE A:2-275
        complexed with dnd, mg
        1. region a:2-275 [121398] picpiclink
      5. 1wxf picpic
        automatically matched to 1WXE A:2-275
        1. region a:2-275 [121397] picpiclink
    3. Helicobacter pylori [TaxId: 210] [142084] (3)
      SQ O25096 3-257
      1. 1xng picpic
        complexed with atp, dnd, mg
        1. region a:3-257 [122186] picpiclink
      2. 1xng picpic
        automatically matched to 1XNG A:3-257
        complexed with atp, dnd, mg
        1. region b:3-257 [122187] picpiclink
      3. 1xnh picpic
        automatically matched to 1XNG A:3-257
        1. region a:5-255 [122188] picpiclink
  3. Asparagine synthetase B, C-terminal domain [52408]
    1. Escherichia coli [TaxId: 562] [52409] (1)
      1. 1ct9 picpicxref
        1. region a:193-516 [31616] picpiclink
        2. region b:193-516 [31617] picpiclink
        3. region c:193-516 [31618] picpiclink
        4. region d:193-516 [31619] picpiclink
  4. beta-Lactam synthetase [69456]
    Asparagine synthetase B homologue
    1. Streptomyces clavuligerus [TaxId: 1901] [69457] (5)
      1. 1jgt picpicxref
        complexed with apc, cma, gol, mg
        1. region a:210-508 [66684] picpiclink
        2. region b:210-508 [66686] picpiclink
      2. 1m1z picpicxref
        1. region a:210-506 [78457] picpiclink
        2. region b:210-508 [78459] picpiclink
      3. 1mb9 picpicxref
        complexed with amp, atp, mg, pop
        1. region a:210-507 [78912] picpiclink
        2. region b:210-508 [78914] picpiclink
      4. 1mc1 picpicxref
        complexed with amp, mg, pcx, pop
        1. region a:210-507 [78939] picpiclink
        2. region b:210-508 [78941] picpiclink
      5. 1mbz picpicxref
        complexed with gol, iot, mg, pop
        1. region a:210-507 [78933] picpiclink
        2. region b:210-508 [78935] picpiclink
    2. Pectobacterium carotovorum [TaxId: 554] [102263] (2)
      carbapenam synthetase CarA
      1. 1q15 picpicxref
        1. region a:206-501 [95538] picpiclink
        2. region b:206-501 [95540] picpiclink
        3. region c:206-501 [95542] picpiclink
        4. region d:206-500 [95544] picpiclink
      2. 1q19 picpicxref
        complexed with apc, mg, ssc
        1. region a:206-501 [95553] picpiclink
        2. region b:206-501 [95555] picpiclink
        3. region c:206-501 [95557] picpiclink
        4. region d:206-501 [95559] picpiclink
  5. Argininosuccinate synthetase, N-terminal domain [69458]
    1. Escherichia coli [TaxId: 562] [69459] (4)
      1. 1k92 picpicxref
        complexed with cry, so4; mutant
        1. region a:1-188 [68325] picpiclink
      2. 1kp2 picpicxref
        complexed with atp, gai, po4
        1. region a:1-188 [72838] picpiclink
      3. 1k97 picpicxref
        complexed with asp, cir; mutant
        1. region a:1-188 [68336] picpiclink
      4. 1kp3 picpicxref
        complexed with atp, cir, gai, po4
        1. region a:1-188 [72840] picpiclink
    2. Thermus thermophilus [TaxId: 274] [75167] (7)
      1. 1j20 picpicxref
        complexed with amp, as1, so4
        1. region a:1-165 [83990] picpiclink
        2. region b:1-165 [83992] picpiclink
        3. region c:1-165 [83994] picpiclink
        4. region d:1-165 [83996] picpiclink
      2. 1kor picpicxref
        complexed with anp, arg, sin
        1. region a:1-165 [72824] picpiclink
        2. region b:1-165 [72826] picpiclink
        3. region c:1-165 [72828] picpiclink
        4. region d:1-165 [72830] picpiclink
      3. 1j1z picpicxref
        complexed with asp, atp, cir
        1. region a:1-165 [83982] picpiclink
        2. region b:1-165 [83984] picpiclink
        3. region c:1-165 [83986] picpiclink
        4. region d:1-165 [83988] picpiclink
      4. 1kh1 picpicxref
        complexed with so4
        1. region a:1-165 [72457] picpiclink
        2. region b:1-165 [72459] picpiclink
        3. region c:1-165 [72461] picpiclink
        4. region d:1-165 [72463] picpiclink
      5. 1kh3 picpicxref
        complexed with anp, arg, asp, mg, so4
        1. region a:1-165 [84392] picpiclink
        2. region b:1-165 [84394] picpiclink
        3. region c:1-165 [84396] picpiclink
        4. region d:1-165 [84398] picpiclink
      6. 1j21 picpicxref
        complexed with atp, cir
        1. region a:1-165 [83998] picpiclink
        2. region b:1-165 [84000] picpiclink
        3. region c:1-165 [84002] picpiclink
        4. region d:1-165 [84004] picpiclink
      7. 1kh2 picpicxref
        complexed with atp
        1. region a:1-165 [72465] picpiclink
        2. region b:1-165 [72467] picpiclink
        3. region c:1-165 [72469] picpiclink
        4. region d:1-165 [72471] picpiclink
    3. Thermotoga maritima [TaxId: 2336] [110493] (1)
      SQ Q9X2A1
      1. 1vl2 picpicxref
        Structural genomics target
        1. region a:2-169 [108708] picpiclink
        2. region b:2-169 [108710] picpiclink
        3. region c:2-169 [108712] picpiclink
        4. region d:2-169 [108714] picpiclink
  6. Putative N-type ATP pyrophosphatase PF0828 [102264]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [102265] (1)
      1. 1ru8 picpic
        structural genomics; NESG target PFR23
        complexed with trs
        1. chain a [97849] picpiclink
        2. chain b [97850] picpiclink
  7. Hypothetical protein PH1257 [142085]
    probable orthologue of PF0828
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [142086] (4)
      SQ O58996 2-227
      1. 2d13 picpic
        1. region a:2-227 [131121] picpiclink
      2. 2d13 picpic
        automatically matched to 2D13 A:2-227
        1. region b:2-227 [131122] picpiclink
      3. 2d13 picpic
        automatically matched to 2D13 A:2-227
        1. region c:3-227 [131123] picpiclink
      4. 2d13 picpic
        automatically matched to 2D13 A:2-227
        1. region d:4-227 [131124] picpiclink
  8. Queuosine biosynthesis protein QueC [159496]
    1. Erwinia carotovora [TaxId: 554] [159497] (1)
      SQ Q6D820 1-230
      1. 2pg3 picpic
        complexed with zn
        1. region a:1-230 [149454] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk