Family: EMG1/NEP1-like

Pfam 03587; structurally most similar to the AF1056-like family, but more decorated

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: alpha/beta knot [75216]
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
4. Superfamily: alpha/beta knot [75217]
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures
   uperfamily
5. Family: EMG1/NEP1-like [159513]
   Pfam 03587; structurally most similar to the AF1056-like family, but more decorated

Protein Domains:

1. Ribosome biogenesis protein NEP1 [159514]
   1. Methanococcus jannaschii [TaxId: 2190] [159515] (6)
      SQ Q57977 2-205
      1. 3bbd
         complexed with gol, sah
         1. region a:2-205 [155061]
      2. 3bbd
         automatically matched to 3BBD A:2-205
         complexed with gol, sah
         1. region b:2-205 [155062]
      3. 3bbe
         automatically matched to 3BBD A:2-205
         complexed with gol
         1. region a:2-205 [155063]
      4. 3bbe
         automatically matched to 3BBD A:2-205
         complexed with gol
         1. region b:2-205 [155064]
      5. 3bbh
         automatically matched to 3BBD A:2-205
         complexed with gol, sfg
         1. region a:2-205 [155071]
      6. 3bbh
         automatically matched to 3BBD A:2-205
         complexed with gol, sfg
         1. region b:2-205 [155072]
2. Essential for mitotic growth 1, EMG1 [159516]
   1. Saccharomyces cerevisiae [TaxId: 4932] [159517] (2)
      SQ Q06287 23-251
      1. 2v3k
         automatically matched to 2V3J A:23-251
         complexed with sam, so4
         1. region a:25-251 [152460]
      2. 2v3j
         complexed with so4
         1. region a:23-251 [152459]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk