Structural Classification of Proteins
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Fold: Nucleotide-binding domain

3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Nucleotide-binding domain [51970]
    3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like

Superfamilies:

  1. Nucleotide-binding domain [51971] (3)
    this superfamily shares the common nucleotide-binding site with and provides a link between the Rossmann-fold NAD(P)-binding and FAD/NAD(P)-binding domains
    link to SUPERFAMILY database - Superfamily
    1. N-terminal domain of adrenodoxin reductase-like [51972] (5)
      1. Trimethylamine dehydrogenase, middle domain [51973]
        1. Methylophilus methylotrophus, w3a1 [TaxId: 17] [51974] (5)
          1. 1djq picpicxrefxref
            1. region a:341-489,a:646-729 [30600] picpiclink
            2. region b:341-489,b:646-729 [30601] picpiclink
          2. 1djn picpicxrefxref
            1. region a:341-489,a:646-729 [30598] picpiclink
            2. region b:341-489,b:646-729 [30599] picpiclink
          3. 1o94 picpicxrefxrefxrefxref
            complexed with adp, amp, fmn, sf4
            1. region a:341-489,a:646-729 [81202] picpiclink
            2. region b:341-489,b:646-729 [81205] picpiclink
          4. 2tmd picpicxrefxref
            complexed with adp, fmn, fs4
            1. region a:341-489,a:646-729 [30602] picpiclink
            2. region b:341-489,b:646-729 [30603] picpiclink
          5. 1o95 picpicxrefxrefxrefxref
            complexed with adp, amp, fmn, fs4
            1. region a:341-489,a:646-729 [81212] picpiclink
            2. region b:341-489,b:646-729 [81215] picpiclink
      2. 2,4-dienoyl-CoA reductase, middle domain [102187]
        1. Escherichia coli [TaxId: 562] [102188] (1)
          1. 1ps9 picpicxrefxref
            complexed with cl, fad, fmn, fs4, mde, nap
            1. region a:331-465,a:628-671 [95078] picpiclink
      3. Adrenodoxin reductase of mitochondrial p450 systems [51975]
        1. Cow (Bos taurus) [TaxId: 9913] [51976] (6)
          1. 1cjc picpicxref
            complexed with fad
            1. region a:6-106,a:332-460 [30604] picpiclink
          2. 1e1m picpicxref
            complexed with fad, nap
            1. region a:6-106,a:332-460 [30605] picpiclink
          3. 1e1k picpicxref
            complexed with fad, nap
            1. region a:6-106,a:332-460 [30606] picpiclink
          4. 1e6e picpicxrefxref
            complexed with fad, fes, so4; mutant
            1. region a:4-106,a:332-460 [59299] picpiclink
            2. region c:5-106,c:332-460 [59302] picpiclink
          5. 1e1l picpicxref
            complexed with fad, nap
            1. region a:6-106,a:332-460 [30607] picpiclink
          6. 1e1n picpicxref
            complexed with fad
            1. region a:6-106,a:332-460 [30608] picpiclink
      4. Ferredoxin:NADP reductase FprA [75129]
        1. Mycobacterium tuberculosis [TaxId: 1773] [75130] (2)
          1. 1lqt picpicxref
            complexed with act, fad, odp
            1. region a:2-108,a:325-456 [74199] picpiclink
            2. region b:2-108,b:325-456 [74201] picpiclink
          2. 1lqu picpicxref
            complexed with act, fad, ndp
            1. region a:2-108,a:325-456 [74203] picpiclink
            2. region b:2-108,b:325-456 [74205] picpiclink
      5. Dihydropyrimidine dehydrogenase, domain 2 [51977]
        1. Pig (Sus scrofa) [TaxId: 9823] [51978] (5)
          1. 1gte picpicxrefxrefxrefxref
            complexed with fad, fmn, fs4, iur
            1. region a:184-287,a:441-532 [70443] picpiclink
            2. region b:184-287,b:441-532 [70448] picpiclink
            3. region c:184-287,c:441-532 [70453] picpiclink
            4. region d:184-287,d:441-532 [70458] picpiclink
          2. 1h7w picpicxrefxrefxrefxref
            complexed with fad, fmn, fs4
            1. region a:184-287,a:441-532 [30609] picpiclink
            2. region b:184-287,b:441-532 [30610] picpiclink
            3. region c:184-287,c:441-532 [30611] picpiclink
            4. region d:184-287,d:441-532 [30612] picpiclink
          3. 1h7x picpicxrefxrefxrefxref
            complexed with fad, fmn, fs4, ndp, urf; mutant
            1. region a:184-287,a:441-532 [30613] picpiclink
            2. region b:184-287,b:441-532 [30614] picpiclink
            3. region c:184-287,c:441-532 [30615] picpiclink
            4. region d:184-287,d:441-532 [30616] picpiclink
          4. 1gth picpicxrefxrefxrefxref
            complexed with fad, fmn, fs4, idh, iur, ndp, ura
            1. region a:184-287,a:441-532 [70486] picpiclink
            2. region b:184-287,b:441-532 [70491] picpiclink
            3. region c:184-287,c:441-532 [70496] picpiclink
            4. region d:184-287,d:441-532 [70501] picpiclink
          5. 1gt8 picpicxrefxrefxrefxref
            complexed with fad, fmn, fs4, ndp, uaa
            1. region a:184-287,a:441-532 [70421] picpiclink
            2. region b:184-287,b:441-532 [70426] picpiclink
            3. region c:184-287,c:441-532 [70431] picpiclink
            4. region d:184-287,d:441-532 [70436] picpiclink
    2. D-aminoacid oxidase, N-terminal domain [51979] (2)
      This family is probably related to the FAD-linked reductases and shares with them the C-terminal domain fold
      1. D-aminoacid oxidase, N-terminal domain [51980]
        1. Pig (Sus scrofa) [TaxId: 9823] [51981] (6)
          1. 1kif picpicxref
            complexed with box, fad
            1. region a:1-194,a:288-339 [30621] picpiclink
            2. region b:1-194,b:288-339 [30622] picpiclink
            3. region c:1-194,c:288-339 [30623] picpiclink
            4. region d:1-194,d:288-339 [30624] picpiclink
            5. region e:1-194,e:288-339 [30625] picpiclink
            6. region f:1-194,f:288-339 [30626] picpiclink
            7. region g:1-194,g:288-339 [30627] picpiclink
            8. region h:1-194,h:288-339 [30628] picpiclink
          2. 1an9 picpicxref
            complexed with be2, fad
            1. region a:1-194,a:288-340 [30617] picpiclink
            2. region b:1-194,b:288-340 [30618] picpiclink
          3. 1ve9 picpicxref
            complexed with bez, fad
            1. region a:1-194,a:288-340 [100571] picpiclink
            2. region b:1-194,b:288-340 [100573] picpiclink
          4. 1evi picpicxref
            complexed with 2pc, fad
            1. region a:1-194,a:288-340 [30629] picpiclink
            2. region b:1-194,b:288-340 [30630] picpiclink
          5. 1ddo picpicxref
            complexed with fad, itr
            1. region a:1-194,a:288-339 [30631] picpiclink
            2. region b:1-194,b:288-339 [30632] picpiclink
            3. region c:1-194,c:288-339 [30633] picpiclink
            4. region d:1-194,d:288-339 [30634] picpiclink
            5. region e:1-194,e:288-339 [30635] picpiclink
            6. region f:1-194,f:288-339 [30636] picpiclink
            7. region g:1-194,g:288-339 [30637] picpiclink
            8. region h:1-194,h:288-339 [30638] picpiclink
          6. 1dao picpicxref
            complexed with fab
            1. region a:1-194,a:288-339 [30639] picpiclink
            2. region b:1-194,b:288-339 [30640] picpiclink
            3. region c:1-194,c:288-339 [30641] picpiclink
            4. region d:1-194,d:288-339 [30642] picpiclink
            5. region e:1-194,e:288-339 [30643] picpiclink
            6. region f:1-194,f:288-339 [30644] picpiclink
            7. region g:1-194,g:288-339 [30645] picpiclink
            8. region h:1-194,h:288-339 [30646] picpiclink
        2. Rhodotorula gracilis [TaxId: 5286] [51982] (4)
          1. 1c0p picpicxref
            complexed with fad, gol, per
            1. region a:999-1193,a:1289-1361 [30647] picpiclink
          2. 1c0k picpicxref
            complexed with fad, lac
            1. region a:999-1193,a:1289-1361 [30648] picpiclink
          3. 1c0l picpicxref
            complexed with fad
            1. region a:999-1193,a:1289-1361 [30649] picpiclink
          4. 1c0i picpicxref
            complexed with 6ab, fad
            1. region a:999-1193,a:1289-1361 [64762] picpiclink
    3. UDP-galactopyranose mutase, N-terminal domain [69427] (2)
      domain structure is similar to that of D-aminoacid oxidase
      1. UDP-galactopyranose mutase, N-terminal domain [69428]
        1. Escherichia coli [TaxId: 562] [69429] (1)
          1. 1i8t picpicxref
            complexed with fad; mutant
            1. region a:1-244,a:314-367 [66094] picpiclink
            2. region b:1-244,b:314-367 [66096] picpiclink
        2. Klebsiella pneumoniae [TaxId: 573] [117446] (3)
          SQ Q48485
          1. 2bi7 picpicxref
            complexed with fad
            1. region a:2-247,a:317-384 [146148] picpiclink
          2. 2bi8 picpicxref
            automatically matched to 2BI7 A:2-247,A:317-384
            complexed with fad
            1. region a:2-247,a:317-384 [146150] picpiclink
          3. 1wam picpicxref
            automatically matched to d1usja1
            complexed with fad
            1. region a:3-243,a:317-383 [120811] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk