Fold: MCP/YpsA-like

3 layers: a/b/a, parallel beta-sheet of 7 strands, order 4321567

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: MCP/YpsA-like [102404]
   3 layers: a/b/a, parallel beta-sheet of 7 strands, order 4321567

Superfamilies:

1. MCP/YpsA-like [102405] (2)
   uperfamily
   1. MoCo carrier protein-like [102406] (6)
      Pfam 03641
      1. Hypothetical protein TM1055 [102407]
         1. Thermotoga maritima [TaxId: 2336] [102408] (1)
            structural genomics; NESG target VT76
            1. 1rcu
               1. chain a [97295]
               2. chain b [97296]
               3. chain c [97297]
               4. chain d [97298]
      2. Hypothetical protein YvdD [102409]
         1. Bacillus subtilis [TaxId: 1423] [102410] (1)
            1. 1t35
               structural genomics; NYSGRC target T833
               complexed with so4
               1. chain a [99108]
               2. chain b [99109]
               3. chain c [99110]
               4. chain d [99111]
               5. chain e [99112]
               6. chain f [99113]
               7. chain g [99114]
               8. chain h [99115]
      3. Hypothetical protein TT1887 (TTHA0294) [117563]
         1. Thermus thermophilus [TaxId: 274] [117564] (1)
            SQ Q5SLJ9
            1. 1weh
               Structural genomics target
               1. chain a [114551]
               2. chain b [114552]
      4. Hypothetical protein TT1465 (TTHA1644) [117565]
         1. Thermus thermophilus [TaxId: 274] [117566] (1)
            SQ Q5SHT6
            1. 1wek
               Structural genomics target
               complexed with po4
               1. chain a [114553]
               2. chain b [114554]
               3. chain c [114555]
               4. chain d [114556]
               5. chain e [114557]
               6. chain f [114558]
      5. Hypothetical protein At5g11950 [117567]
         1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117568] (3)
            SQ Q84MC2
            1. 1ydh
               Structural genomics target
               complexed with edo, no3
               1. chain a [116622]
               2. chain b [116623]
            2. 2q4d
               automatically matched to d1ydha_
               complexed with edo, no3
               1. region a:5-188 [139845]
            3. 2q4d
               automatically matched to d1ydha_
               complexed with edo, no3
               1. region b:8-188 [139846]
      6. Hypothetical protein At2g37210/T2N18.3 [142344]
         1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [142345] (4)
            SQ Q8L8B8 8-190
            1. 2q4o
               automatically matched to 2A33 A:8-190
               complexed with mg, so4
               1. region a:8-190 [139872]
            2. 2q4o
               automatically matched to 2A33 A:8-190
               complexed with mg, so4
               1. region b:10-190 [139873]
            3. 2a33
               complexed with mg, so4
               1. region a:8-190 [126070]
            4. 2a33
               automatically matched to 2A33 A:8-190
               complexed with mg, so4
               1. region b:10-190 [126071]
   2. YpsA-like [159579] (1)
      Pfam 06908; DUF1273; lacking the last strand 7; different set of conserved residues in the putative active site than in the MoCo carrier protein-like family
      1. Hypothetical protein YpsA [159580]
         1. Bacillus subtilis [TaxId: 1423] [159581] (1)
            SQ P50838 1-177
            1. 2nx2
               1. region a:1-177 [148498]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk