Fold: Arginase/deacetylase

3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: Arginase/deacetylase [52767]
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

Superfamilies:

1. Arginase/deacetylase [52768] (2)
   uperfamily
   1. Arginase-like amidino hydrolases [52769] (8)
      Pfam 00491
      1. Arginase [52770]
         1. Rat (Rattus norvegicus) [TaxId: 10116] [52771] (51)
            SQ P07824
            1. 1d3v
               1. chain a [32559]
               2. chain b [32560]
            2. 1zpe
               complexed with bbc, mn; mutant
               1. region a:6-319 [125459]
            3. 1zpe
               automatically matched to 1ZPE A:6-319
               complexed with bbc, mn; mutant
               1. region b:6-319 [125460]
            4. 1zpe
               automatically matched to 1ZPE A:6-319
               complexed with bbc, mn; mutant
               1. region c:6-319 [125461]
            5. 1zpg
               automatically matched to 1ZPE A:6-319
               complexed with bpe, mn; mutant
               1. region a:6-319 [125462]
            6. 1zpg
               automatically matched to 1ZPE A:6-319
               complexed with bpe, mn; mutant
               1. region b:6-319 [125463]
            7. 1zpg
               automatically matched to 1ZPE A:6-319
               complexed with bpe, mn; mutant
               1. region c:6-319 [125464]
            8. 1hqg
               complexed with mn, orn, ure; mutant
               1. chain a [61136]
               2. chain b [61137]
               3. chain c [61138]
            9. 1rla
               complexed with mn
               1. chain a [32561]
               2. chain b [32562]
               3. chain c [32563]
            10. 1hq5
                complexed with mn, s2c
                1. chain a [61123]
                2. chain b [61124]
            11. 1p8r
                complexed with cl, mn, s2c; mutant
                1. chain a [87977]
                2. chain b [87978]
            12. 1t5f
                complexed with dhh, mn
                1. region a:6-319 [119154]
            13. 1t5f
                automatically matched to 1T5F A:6-319
                complexed with dhh, mn
                1. region b:6-319 [119155]
            14. 1t5f
                automatically matched to 1T5F A:6-319
                complexed with dhh, mn
                1. region c:6-319 [119156]
            15. 1ta1
                automatically matched to d1hqga_
                complexed with gol, mn; mutant
                1. region a:6-319 [119201]
            16. 1ta1
                automatically matched to d1hqga_
                complexed with gol, mn; mutant
                1. region b:6-319 [119202]
            17. 1ta1
                automatically matched to d1hqga_
                complexed with gol, mn; mutant
                1. region c:6-319 [119203]
            18. 1t4t
                automatically matched to d1hqfa_
                complexed with dir, mn
                1. region a:6-319 [119151]
            19. 1t4t
                automatically matched to d1hqfa_
                complexed with dir, mn
                1. region b:6-319 [119152]
            20. 1t4t
                automatically matched to d1hqfa_
                complexed with dir, mn
                1. region c:6-319 [119153]
            21. 1t5g
                complexed with arg, f, mn
                1. chain a [112254]
                2. chain b [112255]
                3. chain c [112256]
            22. 3rla
                complexed with mn; mutant
                1. chain a [32564]
                2. chain b [32565]
                3. chain c [32566]
            23. 1p8p
                complexed with mn; mutant
                1. chain a [87971]
                2. chain b [87972]
                3. chain c [87973]
            24. 4rla
                complexed with mn; mutant
                1. chain a [32567]
                2. chain b [32568]
                3. chain c [32569]
            25. 5rla
                complexed with mn; mutant
                1. chain a [32570]
                2. chain b [32571]
                3. chain c [32572]
            26. 1t4r
                automatically matched to d1hqfa_
                complexed with ahi, mn
                1. region a:6-319 [119148]
            27. 1t4r
                automatically matched to d1hqfa_
                complexed with ahi, mn
                1. region b:6-319 [119149]
            28. 1t4r
                automatically matched to d1hqfa_
                complexed with ahi, mn
                1. region c:6-319 [119150]
            29. 1t4p
                automatically matched to d1hqfa_
                complexed with 2bh, mn
                1. region a:6-319 [119145]
            30. 1t4p
                automatically matched to d1hqfa_
                complexed with 2bh, mn
                1. region b:6-319 [119146]
            31. 1t4p
                automatically matched to d1hqfa_
                complexed with 2bh, mn
                1. region c:6-319 [119147]
            32. 1r1o
                complexed with mn, sdc
                1. chain a [96830]
                2. chain b [96831]
                3. chain c [96832]
            33. 1t4s
                complexed with mn, val
                1. chain a [112245]
                2. chain b [112246]
                3. chain c [112247]
            34. 1tbj
                complexed with gol, mn; mutant
                1. region a:6-319 [119216]
            35. 1tbh
                complexed with mn; mutant
                1. region a:6-319 [119213]
            36. 1tbh
                automatically matched to 1TBH A:6-319
                complexed with mn; mutant
                1. region b:6-319 [119214]
            37. 1tbh
                automatically matched to 1TBH A:6-319
                complexed with mn; mutant
                1. region c:6-319 [119215]
            38. 1tbj
                automatically matched to 1TBJ A:6-319
                complexed with gol, mn; mutant
                1. region b:6-319 [119217]
            39. 1tbj
                automatically matched to 1TBJ A:6-319
                complexed with gol, mn; mutant
                1. region c:6-319 [119218]
            40. 1p8q
                complexed with gol, mn; mutant
                1. chain a [87974]
                2. chain b [87975]
                3. chain c [87976]
            41. 1p8m
                complexed with mn; mutant
                1. chain a [87962]
                2. chain b [87963]
                3. chain c [87964]
            42. 1p8n
                complexed with gol, mn; mutant
                1. chain a [87965]
                2. chain b [87966]
                3. chain c [87967]
            43. 1p8o
                complexed with mn; mutant
                1. chain a [87968]
                2. chain b [87969]
                3. chain c [87970]
            44. 2rla
                complexed with mn
                1. chain a [32573]
                2. chain b [32574]
                3. chain c [32575]
            45. 1hqh
                complexed with mn, nnh
                1. chain a [61139]
                2. chain b [61140]
                3. chain c [61141]
            46. 1hqf
                complexed with mn
                1. chain a [61133]
                2. chain b [61134]
                3. chain c [61135]
            47. 1hqx
                complexed with mn; mutant
                1. chain a [61161]
                2. chain b [61162]
                3. chain c [61163]
            48. 1p8s
                complexed with mn; mutant
                1. chain a [87979]
                2. chain b [87980]
                3. chain c [87981]
            49. 1tbl
                complexed with mn; mutant
                1. region a:6-319 [119219]
            50. 1tbl
                automatically matched to 1TBL A:6-319
                complexed with mn; mutant
                1. region b:6-319 [119220]
            51. 1tbl
                automatically matched to 1TBL A:6-319
                complexed with mn; mutant
                1. region c:6-319 [119221]
         2. Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606] [102412] (1)
            1. 1pq3
               complexed with cl, mn, s2c, sul
               1. chain a [94989]
               2. chain b [94990]
               3. chain c [94991]
               4. chain d [94992]
               5. chain e [94993]
               6. chain f [94994]
         3. Bacillus caldovelox [TaxId: 33931] [52772] (5)
            1. 2cev
               complexed with gai, mn
               1. chain a [32576]
               2. chain b [32577]
               3. chain c [32578]
               4. chain d [32579]
               5. chain e [32580]
               6. chain f [32581]
            2. 3cev
               complexed with mn
               1. chain a [32582]
               2. chain b [32583]
               3. chain c [32584]
               4. chain d [32585]
               5. chain e [32586]
               6. chain f [32587]
            3. 1cev
               complexed with mn
               1. chain a [32588]
               2. chain b [32589]
               3. chain c [32590]
               4. chain d [32591]
               5. chain e [32592]
               6. chain f [32593]
            4. 5cev
               complexed with gai, mn
               1. chain a [32594]
               2. chain b [32595]
               3. chain c [32596]
               4. chain d [32597]
               5. chain e [32598]
               6. chain f [32599]
            5. 4cev
               complexed with gai, mn, orn
               1. chain a [32600]
               2. chain b [32601]
               3. chain c [32602]
               4. chain d [32603]
               5. chain e [32604]
               6. chain f [32605]
         4. Human (Homo sapiens) [TaxId: 9606] [142346] (16)
            SQ P05089 5-313
            1. 2aeb
               automatically matched to 1WVA A:5-313
               complexed with ab5, mn
               1. region a:5-313 [126617]
            2. 2aeb
               automatically matched to 1WVA A:5-313
               complexed with ab5, mn
               1. region b:5-313 [126618]
            3. 3dj8
               automatically matched to d1wvaa1
               complexed with exy, mn
               1. region a:6-313 [157753]
            4. 3dj8
               automatically matched to d1wvaa1
               complexed with exy, mn
               1. region b:6-313 [157754]
            5. 2pll
               automatically matched to d1wvaa1
               complexed with abh, mn
               1. region a:5-313 [149634]
            6. 2pll
               automatically matched to d1wvaa1
               complexed with abh, mn
               1. region b:5-313 [149635]
            7. 2zav
               automatically matched to d1wvaa1
               complexed with mn
               1. region a:6-313 [154292]
            8. 2zav
               automatically matched to d1wvaa1
               complexed with mn
               1. region b:6-312 [154293]
            9. 1wva
               complexed with mn, s2c
               1. region a:5-313 [121327]
            10. 1wva
                automatically matched to 1WVA A:5-313
                complexed with mn, s2c
                1. region b:5-313 [121328]
            11. 2pho
                automatically matched to 1WVA A:5-313
                complexed with mn, tsz
                1. region a:6-313 [139698]
            12. 2pho
                automatically matched to 1WVA A:5-313
                complexed with mn, tsz
                1. region b:6-313 [139699]
            13. 2pha
                automatically matched to 1WVA A:5-313
                complexed with mn
                1. region a:5-313 [139690]
            14. 2pha
                automatically matched to 1WVA A:5-313
                complexed with mn
                1. region b:5-313 [139691]
            15. 1wvb
                complexed with mn, s2c; mutant
                1. region a:5-313 [121329]
            16. 1wvb
                automatically matched to 1WVB A:5-313
                complexed with mn, s2c; mutant
                1. region b:5-313 [121330]
         5. Trypanosoma cruzi [TaxId: 5693] [142347] (1)
            SQ Q4DSA0 5-302
            1. 2a0m
               complexed with cl
               1. region a:13-310 [125960]
      2. Proclavaminate amidino hydrolase [75227]
         1. Streptomyces clavuligerus [TaxId: 1901] [75228] (2)
            1. 1gq6
               complexed with mn
               1. chain a [70341]
               2. chain b [70342]
               3. chain c [70343]
            2. 1gq7
               complexed with mn2
               1. chain a [70344]
               2. chain b [70345]
               3. chain c [70346]
               4. chain d [70347]
               5. chain e [70348]
               6. chain f [70349]
      3. Agmatinase [110585]
         1. Deinococcus radiodurans [TaxId: 1299] [110586] (3)
            SQ Q9RZ04 # DRA0149
            1. 1woh
               1. chain a [109446]
               2. chain b [109447]
               3. chain c [109448]
               4. chain d [109449]
               5. chain e [109450]
               6. chain f [109451]
            2. 1wog
               complexed with 16d, mn
               1. chain a [109440]
               2. chain b [109441]
               3. chain c [109442]
               4. chain d [109443]
               5. chain e [109444]
               6. chain f [109445]
            3. 1woi
               complexed with mn
               1. chain a [109452]
               2. chain b [109453]
               3. chain c [109454]
               4. chain d [109455]
               5. chain e [109456]
               6. chain f [109457]
      4. Formimidoylglutamase HutG [117573]
         1. Vibrio cholerae [TaxId: 666] [117574] (1)
            SQ Q9KSQ2
            1. 1xfk
               1. chain a [115264]
   2. Histone deacetylase, HDAC [52773] (3)
      1. HDAC homologue [52774]
         1. Aquifex aeolicus [TaxId: 63363] [52775] (3)
            1. 1c3p
               1. chain a [32606]
            2. 1c3r
               complexed with tsn, zn; mutant
               1. chain a [32607]
               2. chain b [32608]
            3. 1c3s
               complexed with shh, zn; mutant
               1. chain a [32609]
      2. Histone deacetylase 8, HDAC8 [110587]
         1. Human (Homo sapiens) [TaxId: 9606] [110588] (5)
            SQ Q9BY41 13-375 ! SQ Q9BY41
            1. 1t64
               complexed with ca, na, tsn, zn
               1. chain a [106543]
               2. chain b [106544]
            2. 1t67
               complexed with b3n, na, zn
               1. chain a [106553]
            3. 1vkg
               complexed with cri, na, zn
               1. chain a [108660]
               2. chain b [108661]
            4. 1w22
               complexed with k, nhb, zn
               1. chain a [109083]
               2. chain b [109084]
            5. 1t69
               complexed with shh, zn
               1. chain a [106554]
      3. Histone deacetylase 7, HDAC7 [159582]
         HDAC7a
         1. Human (Homo sapiens) [TaxId: 9606] [159583] (9)
            SQ Q8WUI4 515-900
            1. 3c10
               automatically matched to 3C0Y A:515-900
               complexed with k, tsn, zn
               1. region a:515-900 [155847]
            2. 3c10
               automatically matched to 3C0Y A:515-900
               complexed with k, tsn, zn
               1. region b:516-900 [155848]
            3. 3c10
               automatically matched to 3C0Y A:515-900
               complexed with k, tsn, zn
               1. region c:519-899 [155849]
            4. 3c0z
               automatically matched to 3C0Y A:515-900
               complexed with k, shh, zn
               1. region a:515-900 [155844]
            5. 3c0z
               automatically matched to 3C0Y A:515-900
               complexed with k, shh, zn
               1. region b:516-900 [155845]
            6. 3c0z
               automatically matched to 3C0Y A:515-900
               complexed with k, shh, zn
               1. region c:519-899 [155846]
            7. 3c0y
               complexed with k, zn
               1. region a:515-900 [155841]
            8. 3c0y
               automatically matched to 3C0Y A:515-900
               complexed with k, zn
               1. region b:517-900 [155842]
            9. 3c0y
               automatically matched to 3C0Y A:515-900
               complexed with k, zn
               1. region c:519-899 [155843]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk